cluster # 2347

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Schistosoma mansoni
cluster # 2347 cluster # 2347 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2347#0 length = 270 sequences # 1

consensus_2347#1 length = 205 sequences # 1

consensusID : consensus_2347#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [ATGGTTTAATTAAAACGGTATGGTCCAGGATTTCCCGGTCATCGAATTTAGTGGCTGCCTGTGAATATGTCAATGATCCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTATCCGTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTGATACTCAAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGCAACATCACCTTTTCTGGGCCGAGTCAGTTT]

[+] EMBL CD111399             [ATGGTTTAATTAAAACGGTATGGTCCAGGATTTCCCGGTCATCGAATTTAGTGGCTGCCTGTGAATATGTCAATGATCCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTATCCGTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTGATACTCAAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGCAACATCACCTTTTCTGGGCCGAGTCAGTTT]




>consensus_2347#0
ATGGTTTAATTAAAACGGTATGGTCCAGGATTTCCCGGTCATCGAATTTAGTGGCTGCCT
GTGAATATGTCAATGATCCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTAT
CCGTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTG
ATACTCAAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGC
AACATCACCTTTTCTGGGCCGAGTCAGTTT

consensusID : consensus_2347#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 205
fasta sequence

                              [TCAGGGAGATTTTCACCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTATCCGTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTGATACTCTAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGCTACATCACCTTTTCTGGGCCGAGTCAG]

[-] EMBL CD065154             [TCAGGGAGATTTTCACCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTATCCGTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTGATACTCTAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGCTACATCACCTTTTCTGGGCCGAGTCAG]




>consensus_2347#1
TCAGGGAGATTTTCACCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTATCC
GTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTGAT
ACTCTAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGCTA
CATCACCTTTTCTGGGCCGAGTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2347#0      ATGGTTTAATTAAAACGGTATGGTCCAGGATTTCCCGGTCATCGAATTTAGTGGCTGCCT 60
consensus_2347#1      ---------------------------------------------------------TCA 3
                                                                                * 

consensus_2347#0      GTGAATATGTCAATGATCCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTAT 120
consensus_2347#1      GGGAGATTTTCA-----CCAAACTATTCCGTGAATAGCGCATCACGTGGTCGAAGTGTAT 58
                      * **   * ***     *******************************************

consensus_2347#0      CCGTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTG 180
consensus_2347#1      CCGTTGGGTTATTAAGTGATATTATTACCGCCATTCATAATGAGGCCAGTGAGCATCCTG 118
                      ************************************************************

consensus_2347#0      ATACTCAAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGC 240
consensus_2347#1      ATACTCTAAGCTGCGGTCACATCACTTCATCCTCCTTGGATGGTTTACGCGAACATCTGC 178
                      ****** *****************************************************

consensus_2347#0      AACATCACCTTTTCTGGGCCGAGTCAGTTT 270
consensus_2347#1      TACATCACCTTTTCTGGGCCGAGTCAG--- 205
                       **************************