cluster # 236

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Schistosoma mansoni
cluster # 236 cluster # 236 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_236#0 length = 448 sequences # 1

consensus_236#1 length = 345 sequences # 1

consensusID : consensus_236#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [ACCGCCAACATTGAAGAACAACTAAAACAGGTGGGTAAAACACTTCAAAGAACTCTTGAATCGACCAGCTCCACTGAACCCACCCAACATCAAAGTTGCACCCACGGACCTCCCGATCGATGTTGACCCGCCAACAATTGAAGAAAACCAGCATGGCCATCAGACAAATCAAGAGCGGCAAAGCAGCAGAACCAGACAACATTCCAGCAGAGGCACTGAAAGCAGATGTAGCAGTAACTGCAAAGATATTCCATATTCTTTTCAATAATATTTGGGATGAAGAACAAGTACGAACAGACTGAAAAGAAGGACACCTGATCAAAATATCAGAGAAAGGCGATCTCAAGCAAGTGTGATAACTACGATTTCCATGCCTAAAAATTTATGTTATTCGTTAAACTCACGGTTGGCCTGTGTAAACCTATGTGCTTTAGCGAGTTGTAGGGAG]

[+] EMBL CD138808             [ACCGCCAACATTGAAGAACAACTAAAACAGGTGGGTAAAACACTTCAAAGAACTCTTGAATCGACCAGCTCCACTGAACCCACCCAACATCAAAGTTGCACCCACGGACCTCCCGATCGATGTTGACCCGCCAACAATTGAAGAAAACCAGCATGGCCATCAGACAAATCAAGAGCGGCAAAGCAGCAGAACCAGACAACATTCCAGCAGAGGCACTGAAAGCAGATGTAGCAGTAACTGCAAAGATATTCCATATTCTTTTCAATAATATTTGGGATGAAGAACAAGTACGAACAGACTGAAAAGAAGGACACCTGATCAAAATATCAGAGAAAGGCGATCTCAAGCAAGTGTGATAACTACGATTTCCATGCCTAAAAATTTATGTTATTCGTTAAACTCACGGTTGGCCTGTGTAAACCTATGTGCTTTAGCGAGTTGTAGGGAG]




>consensus_236#0
ACCGCCAACATTGAAGAACAACTAAAACAGGTGGGTAAAACACTTCAAAGAACTCTTGAA
TCGACCAGCTCCACTGAACCCACCCAACATCAAAGTTGCACCCACGGACCTCCCGATCGA
TGTTGACCCGCCAACAATTGAAGAAAACCAGCATGGCCATCAGACAAATCAAGAGCGGCA
AAGCAGCAGAACCAGACAACATTCCAGCAGAGGCACTGAAAGCAGATGTAGCAGTAACTG
CAAAGATATTCCATATTCTTTTCAATAATATTTGGGATGAAGAACAAGTACGAACAGACT
GAAAAGAAGGACACCTGATCAAAATATCAGAGAAAGGCGATCTCAAGCAAGTGTGATAAC
TACGATTTCCATGCCTAAAAATTTATGTTATTCGTTAAACTCACGGTTGGCCTGTGTAAA
CCTATGTGCTTTAGCGAGTTGTAGGGAG

consensusID : consensus_236#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 345
fasta sequence

                              [AAGTCCAAGGGCACAAGCGCGAATACACAGACGTAAACAGACGACTGAAGAGGAGCATCAGAACCGACAAACGTAAATATGTGGAAGATTTAGCATTGACAGCGGAAAAGGCTGAAAGAGGGGGAAACATGAGACAACTGTATGATACAACAAAGAAACTCTCTGGCAATTACCCGTATTTAACCAGAACGACCAGTGAAAAGCAAGGGAGGGTGGGGCAATCACCAACATTGAAGAACAACTAAACAGGTGTGTAGTACACTTCAAAGAACTCTTGAATCGACCAGCTCCACTGAACCCACCCAACATCGAAGTAGCACCCACAGAACTCCCAATCGATGTTGA]

[+] EMBL CD088279             [AAGTCCAAGGGCACAAGCGCGAATACACAGACGTAAACAGACGACTGAAGAGGAGCATCAGAACCGACAAACGTAAATATGTGGAAGATTTAGCATTGACAGCGGAAAAGGCTGAAAGAGGGGGAAACATGAGACAACTGTATGATACAACAAAGAAACTCTCTGGCAATTACCCGTATTTAACCAGAACGACCAGTGAAAAGCAAGGGAGGGTGGGGCAATCACCAACATTGAAGAACAACTAAACAGGTGTGTAGTACACTTCAAAGAACTCTTGAATCGACCAGCTCCACTGAACCCACCCAACATCGAAGTAGCACCCACAGAACTCCCAATCGATGTTGA]




>consensus_236#1
AAGTCCAAGGGCACAAGCGCGAATACACAGACGTAAACAGACGACTGAAGAGGAGCATCA
GAACCGACAAACGTAAATATGTGGAAGATTTAGCATTGACAGCGGAAAAGGCTGAAAGAG
GGGGAAACATGAGACAACTGTATGATACAACAAAGAAACTCTCTGGCAATTACCCGTATT
TAACCAGAACGACCAGTGAAAAGCAAGGGAGGGTGGGGCAATCACCAACATTGAAGAACA
ACTAAACAGGTGTGTAGTACACTTCAAAGAACTCTTGAATCGACCAGCTCCACTGAACCC
ACCCAACATCGAAGTAGCACCCACAGAACTCCCAATCGATGTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_236#0      ACCGCCAACATTGAAGAACAACTAAAACAGGTGGGTAAAACACTTCAAAGAACTCTTGAA 60
consensus_236#1      ------------------------------------------------------------
                                                                                 

consensus_236#0      TCGACCAGCTCCACTGAACCCACCCAACATCAAAGTTGCACCCACGGACCTCCCGATCGA 120
consensus_236#1      -------------------------AAGTCCAAGGGCACAAGCGCGAATAC----ACAGA 31
                                              **   *** *   **  * ** *       *  **

consensus_236#0      TGTTGACCCGCCAACAATTGAAGAAAACCAGCATGGCCATCAGAC--AAAT-CAAGAGCG 177
consensus_236#1      CGTAAACA----GACGACTGAAGAGGAGCATCAGAACCGACAAACGTAAATATGTGGAAG 87
                      **  **      ** * ******  * ** **   **  ** **  ****    *   *

consensus_236#0      GCAAAGCAGCAGAACCAGACAACATTCCAGCAGAGGCACTGAAAGCAGATGTAGCAGTAA 237
consensus_236#1      ATTTAGCATTGACAGCGGAAAAGGCTGAAAGAGGGGGAAACATGAGACAACTGTATGATA 147
                         ****     * * ** **   *  *  ** ** *   *    * *  *    *  *

consensus_236#0      CTGCAAAGATATTCCATATTCTTTTCAATAATATTTGGGATGAAGAACAAGTACGAACAG 297
consensus_236#1      CAACAAAGAAACTCTCTGGCAATTAC--CCGTATTTAACCAGAACGACCAGT--GAAAAG 203
                     *  ****** * **  *     ** *     *****     ***  ** ***  *** **

consensus_236#0      ACTGAAAAGAAGGACACCTGATCAAAATATCAGAGAAAGGCGATCTCAAGCAAGTGTGAT 357
consensus_236#1      CAAGGGAGGGTGGGGCAATCACCAA--CATTGAAGAACAAC-----TAAACAGGTGTG-- 254
                        *  * *  **     * * ***   **   ****   *      ** ** *****  

consensus_236#0      AACTACGATTTCCATGCCTAA-AAATTTATGTTATTCGTTAAACTCACGGTTGGCCTGTG 416
consensus_236#1      TAGTACACTTCAAAGAACTCTTGAATCGACCAGCTCCACTGAACCCACCCAACATCGAAG 314
                      * ***  **   *   **    ***  *     * *  * *** ***       *   *

consensus_236#0      TAA-ACCTAT-GTGCTTTAGCGAGTTGTAGGGAG 448
consensus_236#1      TAGCACCCACAGAACTCCCAATCGATGTTGA--- 345
                     **  *** *  *  **       * *** *