cluster # 2370

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Schistosoma mansoni
cluster # 2370 cluster # 2370 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2370#0 length = 571 sequences # 1

consensus_2370#1 length = 474 sequences # 1

consensusID : consensus_2370#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [GCTTATCAAACGTGAACACAAGTCAAATATTTTGCAACAAGACATTCGGACTCCCAACATTTAGTAATATTTACGAAATCCAGTCAAAGTAGCCAAGAGGTGTACAACTTCACACATTTTATTTTGAGGAAGCTTTGACTACTATCAATTAAAAACATATGCTATACATGAGCAAACAATTTACTTTATCCCTTGCTTTACCAGAATCTAGGCATAATAATACATCTTGTCAATTCAATTATTTTTATTTAATTCACACTTTTGCTTCCAAAAACGGATTTTTATTTGCTTCATTTTATTATTAATAACAGCATAATGCTCTTTTCATTCAACGTCCTAGTGACTATTGGAAGGATACATACATCGGGGAATAGTATAAGACCAACTGACAAAAGCATTACAAATTAAAAGTAAACTTGTGTAAAATTTATTCATCATATTAATACTCATCATTTTGCACTTATTAGACACAGAAAACAAGGATTTTGTGTAAGACCAACATTACTAAGAACAACAGCACTAGATATCGTCGGTAGACTGGCGGTTGTAGCAGTAGATCTATTCGCCAGGT]

[+] EMBL CD065259             [GCTTATCAAACGTGAACACAAGTCAAATATTTTGCAACAAGACATTCGGACTCCCAACATTTAGTAATATTTACGAAATCCAGTCAAAGTAGCCAAGAGGTGTACAACTTCACACATTTTATTTTGAGGAAGCTTTGACTACTATCAATTAAAAACATATGCTATACATGAGCAAACAATTTACTTTATCCCTTGCTTTACCAGAATCTAGGCATAATAATACATCTTGTCAATTCAATTATTTTTATTTAATTCACACTTTTGCTTCCAAAAACGGATTTTTATTTGCTTCATTTTATTATTAATAACAGCATAATGCTCTTTTCATTCAACGTCCTAGTGACTATTGGAAGGATACATACATCGGGGAATAGTATAAGACCAACTGACAAAAGCATTACAAATTAAAAGTAAACTTGTGTAAAATTTATTCATCATATTAATACTCATCATTTTGCACTTATTAGACACAGAAAACAAGGATTTTGTGTAAGACCAACATTACTAAGAACAACAGCACTAGATATCGTCGGTAGACTGGCGGTTGTAGCAGTAGATCTATTCGCCAGGT]




>consensus_2370#0
GCTTATCAAACGTGAACACAAGTCAAATATTTTGCAACAAGACATTCGGACTCCCAACAT
TTAGTAATATTTACGAAATCCAGTCAAAGTAGCCAAGAGGTGTACAACTTCACACATTTT
ATTTTGAGGAAGCTTTGACTACTATCAATTAAAAACATATGCTATACATGAGCAAACAAT
TTACTTTATCCCTTGCTTTACCAGAATCTAGGCATAATAATACATCTTGTCAATTCAATT
ATTTTTATTTAATTCACACTTTTGCTTCCAAAAACGGATTTTTATTTGCTTCATTTTATT
ATTAATAACAGCATAATGCTCTTTTCATTCAACGTCCTAGTGACTATTGGAAGGATACAT
ACATCGGGGAATAGTATAAGACCAACTGACAAAAGCATTACAAATTAAAAGTAAACTTGT
GTAAAATTTATTCATCATATTAATACTCATCATTTTGCACTTATTAGACACAGAAAACAA
GGATTTTGTGTAAGACCAACATTACTAAGAACAACAGCACTAGATATCGTCGGTAGACTG
GCGGTTGTAGCAGTAGATCTATTCGCCAGGT

consensusID : consensus_2370#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence

                              [CAGGTGATAATACGACAGCATCTTTTCAGTCATTTATTACTAAAGGTGATAATAATGCTACAGTTGGACTGAATGATTTGCCACTCTTAACTAATGCATTATCAAATCTTGAAAGCACATGCATCACTGTTGACCAGACGGCTGTTTCACATTCGACCTACCTGGCGAATAGATCTACTGCTACAACCGCCAGTCTACCGACGATATTTAGTGCTGTTGTTCTTAGTAATGTTGGTCTTACACAAAATCCTTGTTTATCTGTTTCGGCAGACACTAATCCGGTTCCGGGAATAGCTTTTTCAACTAGGAATCAGCCTCCTTACATACCAGCCCCACTTGTTCTTGGAAACGGCCTAACACTAACCACATTGTTGACTGCTGAGAACATCAGTGGTCTTCTAACACCTACAACTCCAAACACTGCTTTCTTACCACTTCTGGCATCCCCTGGTCCCGGAGGTTTTTATACACCTG]

[+] EMBL CD086767             [CAGGTGATAATACGACAGCATCTTTTCAGTCATTTATTACTAAAGGTGATAATAATGCTACAGTTGGACTGAATGATTTGCCACTCTTAACTAATGCATTATCAAATCTTGAAAGCACATGCATCACTGTTGACCAGACGGCTGTTTCACATTCGACCTACCTGGCGAATAGATCTACTGCTACAACCGCCAGTCTACCGACGATATTTAGTGCTGTTGTTCTTAGTAATGTTGGTCTTACACAAAATCCTTGTTTATCTGTTTCGGCAGACACTAATCCGGTTCCGGGAATAGCTTTTTCAACTAGGAATCAGCCTCCTTACATACCAGCCCCACTTGTTCTTGGAAACGGCCTAACACTAACCACATTGTTGACTGCTGAGAACATCAGTGGTCTTCTAACACCTACAACTCCAAACACTGCTTTCTTACCACTTCTGGCATCCCCTGGTCCCGGAGGTTTTTATACACCTG]




>consensus_2370#1
CAGGTGATAATACGACAGCATCTTTTCAGTCATTTATTACTAAAGGTGATAATAATGCTA
CAGTTGGACTGAATGATTTGCCACTCTTAACTAATGCATTATCAAATCTTGAAAGCACAT
GCATCACTGTTGACCAGACGGCTGTTTCACATTCGACCTACCTGGCGAATAGATCTACTG
CTACAACCGCCAGTCTACCGACGATATTTAGTGCTGTTGTTCTTAGTAATGTTGGTCTTA
CACAAAATCCTTGTTTATCTGTTTCGGCAGACACTAATCCGGTTCCGGGAATAGCTTTTT
CAACTAGGAATCAGCCTCCTTACATACCAGCCCCACTTGTTCTTGGAAACGGCCTAACAC
TAACCACATTGTTGACTGCTGAGAACATCAGTGGTCTTCTAACACCTACAACTCCAAACA
CTGCTTTCTTACCACTTCTGGCATCCCCTGGTCCCGGAGGTTTTTATACACCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2370#0      GCTTATCAAACGTGAACACAAGTCAAATATTTTGCAACAAGACATTCGGACTCCCAACAT 60
consensus_2370#1      ---------------------------CAGGTGATAATACGACAGCATCTTTTCAGTCAT 33
                                                  *  *   ** * ****       * *   ***

consensus_2370#0      TTAGTAATATTTACGA-AATCCAGTCAAAGTAGCCAAGAGGTGTACAACTTCACACATTT 119
consensus_2370#1      TTATTACTAAAGGTGATAATAATGCTACAGTTG-----GACTGAATGATTTGCCACTCTT 88
                      *** ** **     ** ***   *  * *** *        ** *  * **  ***  **

consensus_2370#0      TATTTTGAGGAAGCTTTGACTACTATCAATTAAAAACATATGCTATACATGAGCAAACAA 179
consensus_2370#1      AACT-----AATGCATTATCAAATCTTGA--AAGCACATGCATCACTGTTGACCAGACGG 141
                       * *      * ** **  * * * *  *  **  ****     *    *** ** **  

consensus_2370#0      TTTACTTTATCCCTTGCTTTACCAGAATCTAGGCATAATAATACATCTTGTCAATTCAAT 239
consensus_2370#1      CT-GTTTCACATTCGACCTACCTGGCGAATAGATCTACTGCTACAACC-GCCAGT-CTAC 198
                       *   ** *       * *  *  *    ***   ** *  **** *  * ** * * * 

consensus_2370#0      TATTTTTATTTAATTCACACTTTTGCTTCCAAAAACGG-ATTTTTATTTGCTTCATTTTA 298
consensus_2370#1      CGACGATATTTAGT----GCTGTTGTTCTTAGTAATGTTGGTCTTACACAAAATCCTTGT 254
                            ****** *     ** *** *   *  ** *    * ***          **  

consensus_2370#0      TTATTAATAACAGCATAATGCTCTTTTCATTCAACGTCCTAGTGACTATTGGAAGGATAC 358
consensus_2370#1      TTATCTGTTTCGGCA-GACACTAATCCGGTTCCGGG----AATAGCTTTTTCAACTAGGA 309
                      ****   *  * ***  *  **  *    ***   *    * *  ** **  **  *   

consensus_2370#0      ATACATCGGGGAATAGTATAAGACCAACTGACAAAAGCATTACAAATTAAAAGTAAACTT 418
consensus_2370#1      ATCAGCCTCCTTACA-TACCAGCCCCACTTGTTCTTGGAA-ACGGCCTAACACTAACCAC 367
                      **    *     * * **  ** ** ***       * *  **    *** * *** *  

consensus_2370#0      GTGTAAAATTTATTCATCATATTAATACTCATCATTTTGCACTTATTAGACACAGAAAAC 478
consensus_2370#1      ATT----GTTGACTGCTGAGAACATCAGTGGTCTTCTAACACCTAC--AACTCCAAACAC 421
                       *      ** * *  * * *  *  * *  ** * *  *** **    ** *  ** **

consensus_2370#0      AAGGATTTTGTGTAAGACCAACATTACTAAGAACAACAGCACTAGATATCGTCGGTAGAC 538
consensus_2370#1      TGCTTTCTTAC-CACTTCTGGCATCCCCTGGTCCCGGAGGTTTTTATACACCTG------ 474
                           * **    *   *   ***  *   *  *   **   *  ***     *      

consensus_2370#0      TGGCGGTTGTAGCAGTAGATCTATTCGCCAGGT 571
consensus_2370#1      ---------------------------------