cluster # 2381

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Schistosoma mansoni
cluster # 2381 cluster # 2381 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2381#0 length = 401 sequences # 1

consensus_2381#1 length = 279 sequences # 1

consensusID : consensus_2381#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence

                              [GATCCCCGAATTGTGAAATATAGGTGAGAAAGATCTTTCCAAAGCATGTCCGCACATCTGCCCGACAGCAGCGTATGCGTGACGCGGACACTGAATGAAGAATGCATTGTACATGAAGAATTGGGACCTAGAACATCAAGTGAATGTCGATCAAGAGGATCCAAACTGATCATTAGTAGTCCAACAACAACATCGCACCCATGTCTTAATCTTCTTCTTTCCGGTTCTCAAGCCGTCGACGCAGCAGATTGATGATAATGTTAAGTTAGCTAGTCAGTACCACCGAGGATTTGGAGCTAGTGCTCTTTGGGCTTCTTTAAATGCAGCTGATCAGCAGAATCAGACGGGAGCTTATCAAACTAAACATTTACAATCAATTGGAGATTCACAACAAATGATAT]

[+] EMBL CD065315             [GATCCCCGAATTGTGAAATATAGGTGAGAAAGATCTTTCCAAAGCATGTCCGCACATCTGCCCGACAGCAGCGTATGCGTGACGCGGACACTGAATGAAGAATGCATTGTACATGAAGAATTGGGACCTAGAACATCAAGTGAATGTCGATCAAGAGGATCCAAACTGATCATTAGTAGTCCAACAACAACATCGCACCCATGTCTTAATCTTCTTCTTTCCGGTTCTCAAGCCGTCGACGCAGCAGATTGATGATAATGTTAAGTTAGCTAGTCAGTACCACCGAGGATTTGGAGCTAGTGCTCTTTGGGCTTCTTTAAATGCAGCTGATCAGCAGAATCAGACGGGAGCTTATCAAACTAAACATTTACAATCAATTGGAGATTCACAACAAATGATAT]




>consensus_2381#0
GATCCCCGAATTGTGAAATATAGGTGAGAAAGATCTTTCCAAAGCATGTCCGCACATCTG
CCCGACAGCAGCGTATGCGTGACGCGGACACTGAATGAAGAATGCATTGTACATGAAGAA
TTGGGACCTAGAACATCAAGTGAATGTCGATCAAGAGGATCCAAACTGATCATTAGTAGT
CCAACAACAACATCGCACCCATGTCTTAATCTTCTTCTTTCCGGTTCTCAAGCCGTCGAC
GCAGCAGATTGATGATAATGTTAAGTTAGCTAGTCAGTACCACCGAGGATTTGGAGCTAG
TGCTCTTTGGGCTTCTTTAAATGCAGCTGATCAGCAGAATCAGACGGGAGCTTATCAAAC
TAAACATTTACAATCAATTGGAGATTCACAACAAATGATAT

consensusID : consensus_2381#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [GGCGGTTCAGATTATTGGATTCACCTGTTGGTAATTCGTCGGCTTTATTACGCGATAGTGTTCAAGAGGTAAACGAAGTCCTCGCTCATTACTGACGTACTGTGCAGTTTTCGCCATATGTTCAGGAGAAAGATCTTTCCAAAGCATGTCCCGCACATCTGCCCGACAGCAGCGTATGCGTGAGCAGACACTGAATGAAGAATGCATTGTACATGAAGAATTGGGACCTAGAACATCAAGTGAATGTCGATCAAGAGGATCCAAACTGATCATTAGTAG]

[+] EMBL CD077642             [GGCGGTTCAGATTATTGGATTCACCTGTTGGTAATTCGTCGGCTTTATTACGCGATAGTGTTCAAGAGGTAAACGAAGTCCTCGCTCATTACTGACGTACTGTGCAGTTTTCGCCATATGTTCAGGAGAAAGATCTTTCCAAAGCATGTCCCGCACATCTGCCCGACAGCAGCGTATGCGTGAGCAGACACTGAATGAAGAATGCATTGTACATGAAGAATTGGGACCTAGAACATCAAGTGAATGTCGATCAAGAGGATCCAAACTGATCATTAGTAG]




>consensus_2381#1
GGCGGTTCAGATTATTGGATTCACCTGTTGGTAATTCGTCGGCTTTATTACGCGATAGTG
TTCAAGAGGTAAACGAAGTCCTCGCTCATTACTGACGTACTGTGCAGTTTTCGCCATATG
TTCAGGAGAAAGATCTTTCCAAAGCATGTCCCGCACATCTGCCCGACAGCAGCGTATGCG
TGAGCAGACACTGAATGAAGAATGCATTGTACATGAAGAATTGGGACCTAGAACATCAAG
TGAATGTCGATCAAGAGGATCCAAACTGATCATTAGTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2381#0      ------------------------------------------------------------
consensus_2381#1      GGCGGTTCAGATTATTGGATTCACCTGTTGGTAATTCGTCGGCTTTATTACGCGATAGTG 60
                                                                                  

consensus_2381#0      ----------------------------------------GATCCCCGAATTGTGAAATA 20
consensus_2381#1      TTCAAGAGGTAAACGAAGTCCTCGCTCATTACTGACGTACTGTGCAGTTTTCGCCATATG 120
                                                                * *     * *  * ** 

consensus_2381#0      TAGGTGAGAAAGATCTTTCCAAAGCATGTCC-GCACATCTGCCCGACAGCAGCGTATGCG 79
consensus_2381#1      TTCAGGAGAAAGATCTTTCCAAAGCATGTCCCGCACATCTGCCCGACAGCAGCGTATGCG 180
                      *    ************************** ****************************

consensus_2381#0      TGACGCGGACACTGAATGAAGAATGCATTGTACATGAAGAATTGGGACCTAGAACATCAA 139
consensus_2381#1      TGA-GCAGACACTGAATGAAGAATGCATTGTACATGAAGAATTGGGACCTAGAACATCAA 239
                      *** ** *****************************************************

consensus_2381#0      GTGAATGTCGATCAAGAGGATCCAAACTGATCATTAGTAGTCCAACAACAACATCGCACC 199
consensus_2381#1      GTGAATGTCGATCAAGAGGATCCAAACTGATCATTAGTAG-------------------- 279
                      ****************************************                    

consensus_2381#0      CATGTCTTAATCTTCTTCTTTCCGGTTCTCAAGCCGTCGACGCAGCAGATTGATGATAAT 259
consensus_2381#1      ------------------------------------------------------------
                                                                                  

consensus_2381#0      GTTAAGTTAGCTAGTCAGTACCACCGAGGATTTGGAGCTAGTGCTCTTTGGGCTTCTTTA 319
consensus_2381#1      ------------------------------------------------------------
                                                                                  

consensus_2381#0      AATGCAGCTGATCAGCAGAATCAGACGGGAGCTTATCAAACTAAACATTTACAATCAATT 379
consensus_2381#1      ------------------------------------------------------------
                                                                                  

consensus_2381#0      GGAGATTCACAACAAATGATAT 401
consensus_2381#1      ----------------------