These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_239#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [GTGAAAGAAGAATATAGAAGAGATGAGCCTTAACTTAATATTCTTGTTGTAAAACAAAAACTAAAAGATATTTCATTAATCATCTAGTCAGCGGAATATGAAAAATCAAAGTAAATATGAATTCTATCCATATAGCATTTAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTAT] [+] EMBL CD123964 [GTGAAAGAAGAATATAGAAGAGATGAGCCTTAACTTAATATTCTTGTTGTAAAACAAAAACTAAAAGATATTTCATTAATCATCTAGTCAGCGGAATATGAAAAATCAAAGTAAATATGAATTCTATCCATATAGCATTTAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTAT] consensusID : consensus_239#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence [AACTACACCTGTTCACAGTCCACTCTGTCCATCGCCAAACCAACACCACCGTCTAGTGCAGTACACTCCAATTGAAAAATACACTGGCTCGCTCACATCTGTCGATACAACTACACCTGTTCACAGT] [+] EMBL CD089873 [AACTACACCTGTTCACAGTCCACTCTGTCCATCGCCAAACCAACACCACCGTCTAGTGCAGTACACTCCAATTGAAAAATACACTGGCTCGCTCACATCTGTCGATACAACTACACCTGTTCACAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_239#0 GTGAAAGAAGAATATAGAAGAGATGAGCCTTAACTTAATATTCTTGTTGTAAAACAAAAA 60 consensus_239#1 ---------------AACTACACCTGTTCACAGTCCACTCTGTCCATCGCCAAACCAACA 45 * * * * * * * * **** ** * consensus_239#0 CTAAAAGATATTTCATTAATCATCTAGTCAGCGGAATATGAAAAATCAAAGTAAATATGA 120 consensus_239#1 CCACCGTCTAGTGCAGTACAC-TCCAATT-GAAAAATACACTGGCTCGCT-CACATCTG- 101 * * ** * ** ** * ** * * * **** ** * ** ** consensus_239#0 ATTCTATCCATATAGCATTTAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAG 180 consensus_239#1 --TCGATACAACTACACCTGTTCACAGT-------------------------------- 127 ** ** ** ** * * *** consensus_239#0 TGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGT 240 consensus_239#1 ------------------------------------------------------------ consensus_239#0 GGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGTGAGCGAGTGTATTTTTGAATT 300 consensus_239#1 ------------------------------------------------------------ consensus_239#0 GGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGA 360 consensus_239#1 ------------------------------------------------------------ consensus_239#0 GTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAG 420 consensus_239#1 ------------------------------------------------------------ consensus_239#0 TGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAAT 480 consensus_239#1 ------------------------------------------------------------ consensus_239#0 TGGAGTGTACTGACTAGACGGGAGTAT 507 consensus_239#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||