cluster # 24

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Schistosoma mansoni
cluster # 24 cluster # 24 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_24#0 length = 508 sequences # 1

consensus_24#1 length = 177 sequences # 1

consensusID : consensus_24#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [TTAATCAATCATAATTGTTTGTCAATAATGTCTTTAGATTTTAGAGTATAAGCTTTTGAAGAAAATGTGTATAGTCGAAATGTAGTTGGGAATCTAGAAATGTTATTAAACGTACTTAGCACTCGTAATTGAGTTGCATTTGTTGAACTACTAACTTATTCAATCAACAGGATTTCTTACACAAATAAATTATTATTTGACCGTCAGGTTTTAAAATTCTCTATCATTCAAATTGGTATGTTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAAGTTTGGTTAGACATCAATGTGTTAATAGTTTCTCATTTCAAATTACTAATCATGATTCACATTCATTGTGACTTTTCTTTCGTTATCCATTTATGAAAAACCGAATTTATTTATGTTAAACCATATTGTTAAACATTCCATGTAAATTAATAAAGATGACACTTTTTGTTTAAATCTTCACTTAATAGAACTATCTNTCACATTCACTATTAATTACCTAAATACAT]

[+] EMBL CD131641             [TTAATCAATCATAATTGTTTGTCAATAATGTCTTTAGATTTTAGAGTATAAGCTTTTGAAGAAAATGTGTATAGTCGAAATGTAGTTGGGAATCTAGAAATGTTATTAAACGTACTTAGCACTCGTAATTGAGTTGCATTTGTTGAACTACTAACTTATTCAATCAACAGGATTTCTTACACAAATAAATTATTATTTGACCGTCAGGTTTTAAAATTCTCTATCATTCAAATTGGTATGTTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAAGTTTGGTTAGACATCAATGTGTTAATAGTTTCTCATTTCAAATTACTAATCATGATTCACATTCATTGTGACTTTTCTTTCGTTATCCATTTATGAAAAACCGAATTTATTTATGTTAAACCATATTGTTAAACATTCCATGTAAATTAATAAAGATGACACTTTTTGTTTAAATCTTCACTTAATAGAACTATCTNTCACATTCACTATTAATTACCTAAATACAT]




>consensus_24#0
TTAATCAATCATAATTGTTTGTCAATAATGTCTTTAGATTTTAGAGTATAAGCTTTTGAA
GAAAATGTGTATAGTCGAAATGTAGTTGGGAATCTAGAAATGTTATTAAACGTACTTAGC
ACTCGTAATTGAGTTGCATTTGTTGAACTACTAACTTATTCAATCAACAGGATTTCTTAC
ACAAATAAATTATTATTTGACCGTCAGGTTTTAAAATTCTCTATCATTCAAATTGGTATG
TTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAAGTTTGGTTAGACATCAATG
TGTTAATAGTTTCTCATTTCAAATTACTAATCATGATTCACATTCATTGTGACTTTTCTT
TCGTTATCCATTTATGAAAAACCGAATTTATTTATGTTAAACCATATTGTTAAACATTCC
ATGTAAATTAATAAAGATGACACTTTTTGTTTAAATCTTCACTTAATAGAACTATCTNTC
ACATTCACTATTAATTACCTAAATACAT

consensusID : consensus_24#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [ATCCCGGTGGAATTCACGAGTCGCGAGAGTAGACGTATCCATGAATGTTTTAAAATTCTCTATCATTCAAATTGGTATGTTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAAGTTTGGTTAGACATCAATGTGTTAATAGTTTCTCATTTCAAATTACTAATCATGATT]

[+] EMBL CD128636             [ATCCCGGTGGAATTCACGAGTCGCGAGAGTAGACGTATCCATGAATGTTTTAAAATTCTCTATCATTCAAATTGGTATGTTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAAGTTTGGTTAGACATCAATGTGTTAATAGTTTCTCATTTCAAATTACTAATCATGATT]




>consensus_24#1
ATCCCGGTGGAATTCACGAGTCGCGAGAGTAGACGTATCCATGAATGTTTTAAAATTCTC
TATCATTCAAATTGGTATGTTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAA
GTTTGGTTAGACATCAATGTGTTAATAGTTTCTCATTTCAAATTACTAATCATGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_24#0      TTAATCAATCATAATTGTTTGTCAATAATGTCTTTAGATTTTAGAGTATAAGCTTTTGAA 60
consensus_24#1      ------------------------------------------------------------
                                                                                

consensus_24#0      GAAAATGTGTATAGTCGAAATGTAGTTGGGAATCTAGAAATGTTATTAAACGTACTTAGC 120
consensus_24#1      ------------------------------------------------------------
                                                                                

consensus_24#0      ACTCGTAATTGAGTTGCATTTGTTGAACTACTAACTTATTCAATCAACAGGATTTCTTAC 180
consensus_24#1      -----------------------------------------ATCCCGGTGGAATTCACGA 19
                                                             *  *    *** ***    

consensus_24#0      ACAAATAAATTATTATTTGACCGTCAG-GTTTTAAAATTCTCTATCATTCAAATTGGTAT 239
consensus_24#1      GTCGCGAGAGTAG-ACGTATCCATGAATGTTTTAAAATTCTCTATCATTCAAATTGGTAT 78
                          * * **  *  *  ** * *  ********************************

consensus_24#0      GTTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAAGTTTGGTTAGACATCAAT 299
consensus_24#1      GTTGTAACTTTTGTAGATCATTTTATATAGCATAAGTGTGAAGTTTGGTTAGACATCAAT 138
                    ************************************************************

consensus_24#0      GTGTTAATAGTTTCTCATTTCAAATTACTAATCATGATTCACATTCATTGTGACTTTTCT 359
consensus_24#1      GTGTTAATAGTTTCTCATTTCAAATTACTAATCATGATT--------------------- 177
                    ***************************************                     

consensus_24#0      TTCGTTATCCATTTATGAAAAACCGAATTTATTTATGTTAAACCATATTGTTAAACATTC 419
consensus_24#1      ------------------------------------------------------------
                                                                                

consensus_24#0      CATGTAAATTAATAAAGATGACACTTTTTGTTTAAATCTTCACTTAATAGAACTATCTNT 479
consensus_24#1      ------------------------------------------------------------
                                                                                

consensus_24#0      CACATTCACTATTAATTACCTAAATACAT 508
consensus_24#1      -----------------------------