cluster # 2405

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Schistosoma mansoni
cluster # 2405 cluster # 2405 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2405#0 length = 342 sequences # 1

consensus_2405#1 length = 263 sequences # 1

consensusID : consensus_2405#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [GATTTTGTGGATACATAGATAAATAGATAGATAGATAGTGTGGATAGATAGGTAGATAGTGTTGATAGATAGATAGATAGATTAGATAGATAGACAGTGTGGATAGATAGATAGATAGATAGTGTAGATAGATAGATCGATAGTGTGGATAGACAGATACACACACACACACACACGAAATACTTGATATAGCAGTCAATGATATTACCACCCAACAATAACGTCCAAAATCCAAAAGAACTAAAGATGATATTGAATACAATGCAAACAATTGTGCCGTAAACATTCAATTTTACAATCAACATTCCTTATACTGATCTGTTCAACACATTTTTTTCTTCT]

[+] EMBL CD127920             [GATTTTGTGGATACATAGATAAATAGATAGATAGATAGTGTGGATAGATAGGTAGATAGTGTTGATAGATAGATAGATAGATTAGATAGATAGACAGTGTGGATAGATAGATAGATAGATAGTGTAGATAGATAGATCGATAGTGTGGATAGACAGATACACACACACACACACACGAAATACTTGATATAGCAGTCAATGATATTACCACCCAACAATAACGTCCAAAATCCAAAAGAACTAAAGATGATATTGAATACAATGCAAACAATTGTGCCGTAAACATTCAATTTTACAATCAACATTCCTTATACTGATCTGTTCAACACATTTTTTTCTTCT]




>consensus_2405#0
GATTTTGTGGATACATAGATAAATAGATAGATAGATAGTGTGGATAGATAGGTAGATAGT
GTTGATAGATAGATAGATAGATTAGATAGATAGACAGTGTGGATAGATAGATAGATAGAT
AGTGTAGATAGATAGATCGATAGTGTGGATAGACAGATACACACACACACACACACGAAA
TACTTGATATAGCAGTCAATGATATTACCACCCAACAATAACGTCCAAAATCCAAAAGAA
CTAAAGATGATATTGAATACAATGCAAACAATTGTGCCGTAAACATTCAATTTTACAATC
AACATTCCTTATACTGATCTGTTCAACACATTTTTTTCTTCT

consensusID : consensus_2405#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence

                              [ACCCCCCGAAAAAAGAACAAAAACAAAAAAAGAACATTAAAAACCAAGTAAAACTATCATAAACAATAAACTAAGAGAAGAATTTTCTTTTTCCTCTCTTTTTTTCCCACGAAATTCAAAAAGGGTATCATTTGTAATATTGACAAATAGTTACTAACCGTTAGAATATGATGAAAGTGTTAAAAACAAACTATCATTGAGCAGTCAATAAAAGAAACAAACAAACATACAAAAAAAGAAGATAAAAAGACAAACATTTTATA]

[+] EMBL CD065393             [ACCCCCCGAAAAAAGAACAAAAACAAAAAAAGAACATTAAAAACCAAGTAAAACTATCATAAACAATAAACTAAGAGAAGAATTTTCTTTTTCCTCTCTTTTTTTCCCACGAAATTCAAAAAGGGTATCATTTGTAATATTGACAAATAGTTACTAACCGTTAGAATATGATGAAAGTGTTAAAAACAAACTATCATTGAGCAGTCAATAAAAGAAACAAACAAACATACAAAAAAAGAAGATAAAAAGACAAACATTTTATA]




>consensus_2405#1
ACCCCCCGAAAAAAGAACAAAAACAAAAAAAGAACATTAAAAACCAAGTAAAACTATCAT
AAACAATAAACTAAGAGAAGAATTTTCTTTTTCCTCTCTTTTTTTCCCACGAAATTCAAA
AAGGGTATCATTTGTAATATTGACAAATAGTTACTAACCGTTAGAATATGATGAAAGTGT
TAAAAACAAACTATCATTGAGCAGTCAATAAAAGAAACAAACAAACATACAAAAAAAGAA
GATAAAAAGACAAACATTTTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2405#0      GATTTTGTGGATACATAGATAAATAGATAGATAGATAGTGTGGATAGATAGGTAGATAGT 60
consensus_2405#1      ------------------------------------------------------------
                                                                                  

consensus_2405#0      GTTGATAGATAGATAGATAGATTAGATAGATAGACAGTGTGGATAGATAGATAGATAGAT 120
consensus_2405#1      ACCCCCCGAAAAAAGAACAAA---AACAAAAAAAGAACATTAAAAACCAAGTAAA--ACT 55
                             ** * *   * * *    * * * * * *   *  * *   *  ** *    *

consensus_2405#0      AGTGTAGATAGATAGATCGATAGTGTGGATAGACAGATACACACACACACACACACGAAA 180
consensus_2405#1      ATCATAAACA-ATAAACTAAGAGAAGAATTTTCTTTTTCCTCTCTTTTTTTCCCACGAAA 114
                      *   ** * * *** *   * **      *       * * * *       * *******

consensus_2405#0      TACTTGATATAGCAGTCAATGATATTACCACCCAACAATAACGTCCAAAATCCAAAAGAA 240
consensus_2405#1      T--TCAAAAAGGGTATCATTTGTAATATTGACAAATAGTTACT-----AACCGTTAGAAT 167
                      *  *  * *  *   *** *  ** **    * ** * * **      ** *   *  * 

consensus_2405#0      CTAAAGATGATATTGAATACAATGCAAACAATTGTGCCGTAAACATTCAATTTTACAATC 300
consensus_2405#1      ATGATGAAAGTGTTAAAAACA-----AACTATCATTGAGCAGTCAATAAAAGAAACAAAC 222
                       * * **   * ** ** ***     *** **  *   * *  ** * **    **** *

consensus_2405#0      AACATTCCTTATACTGATCTGTTCAACACATTTTTTTCTTCT 342
consensus_2405#1      AAACATACAAAAAAAGAAGATAAAAAGACAAACATTTTATA- 263
                      **   * *  * *  **       ** ***    ***  *