These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2405#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [GATTTTGTGGATACATAGATAAATAGATAGATAGATAGTGTGGATAGATAGGTAGATAGTGTTGATAGATAGATAGATAGATTAGATAGATAGACAGTGTGGATAGATAGATAGATAGATAGTGTAGATAGATAGATCGATAGTGTGGATAGACAGATACACACACACACACACACGAAATACTTGATATAGCAGTCAATGATATTACCACCCAACAATAACGTCCAAAATCCAAAAGAACTAAAGATGATATTGAATACAATGCAAACAATTGTGCCGTAAACATTCAATTTTACAATCAACATTCCTTATACTGATCTGTTCAACACATTTTTTTCTTCT] [+] EMBL CD127920 [GATTTTGTGGATACATAGATAAATAGATAGATAGATAGTGTGGATAGATAGGTAGATAGTGTTGATAGATAGATAGATAGATTAGATAGATAGACAGTGTGGATAGATAGATAGATAGATAGTGTAGATAGATAGATCGATAGTGTGGATAGACAGATACACACACACACACACACGAAATACTTGATATAGCAGTCAATGATATTACCACCCAACAATAACGTCCAAAATCCAAAAGAACTAAAGATGATATTGAATACAATGCAAACAATTGTGCCGTAAACATTCAATTTTACAATCAACATTCCTTATACTGATCTGTTCAACACATTTTTTTCTTCT] consensusID : consensus_2405#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [ACCCCCCGAAAAAAGAACAAAAACAAAAAAAGAACATTAAAAACCAAGTAAAACTATCATAAACAATAAACTAAGAGAAGAATTTTCTTTTTCCTCTCTTTTTTTCCCACGAAATTCAAAAAGGGTATCATTTGTAATATTGACAAATAGTTACTAACCGTTAGAATATGATGAAAGTGTTAAAAACAAACTATCATTGAGCAGTCAATAAAAGAAACAAACAAACATACAAAAAAAGAAGATAAAAAGACAAACATTTTATA] [+] EMBL CD065393 [ACCCCCCGAAAAAAGAACAAAAACAAAAAAAGAACATTAAAAACCAAGTAAAACTATCATAAACAATAAACTAAGAGAAGAATTTTCTTTTTCCTCTCTTTTTTTCCCACGAAATTCAAAAAGGGTATCATTTGTAATATTGACAAATAGTTACTAACCGTTAGAATATGATGAAAGTGTTAAAAACAAACTATCATTGAGCAGTCAATAAAAGAAACAAACAAACATACAAAAAAAGAAGATAAAAAGACAAACATTTTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2405#0 GATTTTGTGGATACATAGATAAATAGATAGATAGATAGTGTGGATAGATAGGTAGATAGT 60 consensus_2405#1 ------------------------------------------------------------ consensus_2405#0 GTTGATAGATAGATAGATAGATTAGATAGATAGACAGTGTGGATAGATAGATAGATAGAT 120 consensus_2405#1 ACCCCCCGAAAAAAGAACAAA---AACAAAAAAAGAACATTAAAAACCAAGTAAA--ACT 55 ** * * * * * * * * * * * * * * * ** * * consensus_2405#0 AGTGTAGATAGATAGATCGATAGTGTGGATAGACAGATACACACACACACACACACGAAA 180 consensus_2405#1 ATCATAAACA-ATAAACTAAGAGAAGAATTTTCTTTTTCCTCTCTTTTTTTCCCACGAAA 114 * ** * * *** * * ** * * * * * * ******* consensus_2405#0 TACTTGATATAGCAGTCAATGATATTACCACCCAACAATAACGTCCAAAATCCAAAAGAA 240 consensus_2405#1 T--TCAAAAAGGGTATCATTTGTAATATTGACAAATAGTTACT-----AACCGTTAGAAT 167 * * * * * *** * ** ** * ** * * ** ** * * * consensus_2405#0 CTAAAGATGATATTGAATACAATGCAAACAATTGTGCCGTAAACATTCAATTTTACAATC 300 consensus_2405#1 ATGATGAAAGTGTTAAAAACA-----AACTATCATTGAGCAGTCAATAAAAGAAACAAAC 222 * * ** * ** ** *** *** ** * * * ** * ** **** * consensus_2405#0 AACATTCCTTATACTGATCTGTTCAACACATTTTTTTCTTCT 342 consensus_2405#1 AAACATACAAAAAAAGAAGATAAAAAGACAAACATTTTATA- 263 ** * * * * ** ** *** *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||