These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2407#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCGTTAATAGTAACTTATTTATTAGTATTATTGAGTACGCCCAATCGAGTCCAAGCAGCTCTTATATTATACATTGAATTCATTTAAAATACACCCAAATCACATATTGTTATGAAACTGTCATAGTGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGAATAAATCTATGAGAAACATGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAAAATAAAAATGACTCATTCGAAGATGACAGATGGGACGCATACAGATTGATATATCTGCATCTTGAACTGAACGCTAGTTCCGAAATACAGGTACATCCGGCTGTCAAGTTCCAAATAGGACGAAACTCGAGTCCTTGATTCAACTGCTAAACACTATCCATCTCTTGTTATAATGCTTGAACTTAATGGCAACATCGAGG] [+] EMBL CD086465 [TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCGTTAATAGTAACTTATTTATTAGTATTATTGAGTACGCCCAATCGAGTCCAAGCAGCTCTTATATTATACATTGAATTCATTTAAAATACACCCAAATCACATATTGTTATGAAACTGTCATAGTGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGAATAAATCTATGAGAAACATGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAAAATAAAAATGACTCATTCGAAGATGACAGATGGGACGCATACAGATTGATATATCTGCATCTTGAACTGAACGCTAGTTCCGAAATACAGGTACATCCGGCTGTCAAGTTCCAAATAGGACGAAACTCGAGTCCTTGATTCAACTGCTAAACACTATCCATCTCTTGTTATAATGCTTGAACTTAATGGCAACATCGAGG] consensusID : consensus_2407#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCGATAATAGTAACTTATCTATTAATATTATCGAATACGCGCGGATAACTACAAGCAACTTTTATTTTATACATTGACTACCTCTTGAAGACACCCAGATCACATATTGCTATGAAACTGTCATAGGGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGATTAAATCTATGAGAAACACGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAAAATAAAAATGACTCATTCTAAGATGACAGAT] [+] EMBL CD086469 [TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCGATAATAGTAACTTATCTATTAATATTATCGAATACGCGCGGATAACTACAAGCAACTTTTATTTTATACATTGACTACCTCTTGAAGACACCCAGATCACATATTGCTATGAAACTGTCATAGGGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGATTAAATCTATGAGAAACACGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAAAATAAAAATGACTCATTCTAAGATGACAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2407#0 TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCG 60 consensus_2407#1 TTACTGAGAATCCTGAACATAAAATCAAATGGAAATACGTATGAAGTTCCATACCATTCG 60 ************************************************************ consensus_2407#0 TTAATAGTAACTTATTTATTAGTATTATTGAGTACGCCCAATCGAGTCCAAGCAGCTCTT 120 consensus_2407#1 ATAATAGTAACTTATCTATTAATATTATCGAATACGCGCGGATAACTACAAGCAACTTTT 120 ************** ***** ****** ** ***** * * * ****** ** ** consensus_2407#0 ATATTATACATTGAATTCATTTAAAATACACCCAAATCACATATTGTTATGAAACTGTCA 180 consensus_2407#1 ATTTTATACATTGACTACCTCTTGAAGACACCCAGATCACATATTGCTATGAAACTGTCA 180 ** *********** * * * * ** ******* *********** ************* consensus_2407#0 TAGTGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGAATAAATCTA 240 consensus_2407#1 TAGGGCTCCAACTATATGAAATCTAGAAAATCGTTCAAGAAAATTTGATGATTAAATCTA 240 *** *********************************************** ******** consensus_2407#0 TGAGAAACATGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAA 300 consensus_2407#1 TGAGAAACACGAATAACGTTTAAAAATGAACATTGAACTAAATCTAACTAAATTATATAA 300 ********* ************************************************** consensus_2407#0 AATAAAAATGACTCATTCGAAGATGACAGATGGGACGCATACAGATTGATATATCTGCAT 360 consensus_2407#1 AATAAAAATGACTCATTCTAAGATGACAGAT----------------------------- 331 ****************** ************ consensus_2407#0 CTTGAACTGAACGCTAGTTCCGAAATACAGGTACATCCGGCTGTCAAGTTCCAAATAGGA 420 consensus_2407#1 ------------------------------------------------------------ consensus_2407#0 CGAAACTCGAGTCCTTGATTCAACTGCTAAACACTATCCATCTCTTGTTATAATGCTTGA 480 consensus_2407#1 ------------------------------------------------------------ consensus_2407#0 ACTTAATGGCAACATCGAGG 500 consensus_2407#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||