cluster # 2421

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Schistosoma mansoni
cluster # 2421 cluster # 2421 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2421#0 length = 491 sequences # 1

consensus_2421#1 length = 455 sequences # 1

consensusID : consensus_2421#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [CGGGAGAAGCTCAGGCTTGAAATCCTGGACTCGTCAGGGTCTGGGAGTTGTAGCCTAATGGGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTGACTGGAACGTCATGCCATAGAGGGTGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGCCTCGGTACGTTCCATCAGAGTCGAGTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAACTTCCGCTAAAGCTAAATACGGACCAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGTCAGCTGAAGAGGCTGTTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCTTACTGCATCGGCACCTTGAGCATGGGAATCGTATTCACCGCGGATGCGCAGGCTATGCGGGGTTTTGCGGTTTCTGTGTGCTTGCACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCAGGGGTAAACGACTTCGCAGGCCTTTCGGGGCGATG]

[+] EMBL CD086764             [CGGGAGAAGCTCAGGCTTGAAATCCTGGACTCGTCAGGGTCTGGGAGTTGTAGCCTAATGGGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTGACTGGAACGTCATGCCATAGAGGGTGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGCCTCGGTACGTTCCATCAGAGTCGAGTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAACTTCCGCTAAAGCTAAATACGGACCAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGTCAGCTGAAGAGGCTGTTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCTTACTGCATCGGCACCTTGAGCATGGGAATCGTATTCACCGCGGATGCGCAGGCTATGCGGGGTTTTGCGGTTTCTGTGTGCTTGCACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCAGGGGTAAACGACTTCGCAGGCCTTTCGGGGCGATG]




>consensus_2421#0
CGGGAGAAGCTCAGGCTTGAAATCCTGGACTCGTCAGGGTCTGGGAGTTGTAGCCTAATG
GGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTGACTGGAACGTCATGCCATAGAGGG
TGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGCCTCGGTACGTTCCATCAGAGTCGA
GTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAACTTCCGCTAAAGCTAAATACGGAC
CAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGTCAGCTGAAGAGGCTG
TTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCTTACTGCATCGGCACCTTGAGCATG
GGAATCGTATTCACCGCGGATGCGCAGGCTATGCGGGGTTTTGCGGTTTCTGTGTGCTTG
CACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCAGGGGTAAACGACTTCGCAGGCCTT
TCGGGGCGATG

consensusID : consensus_2421#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 455
fasta sequence

                              [GCCGTGTTTATAAGTAGCCTAATGGGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTGACTGGAACGTCATGCCATAGAGGGTGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGCCTCGGTACGTTCCATCAGAGTCGAGTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAACTTCCGCTAAAGCTAAATACGGACCAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGTCAGCTGAAGAGGCTGTTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCTTACTGCATCGGCACCTTGAGCATGGGAATCGTATTCACCGCGGATGCGCAGGCTATGCGGGGTTTTGCGGTTTCTGTGTGCTTGCACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCAGGGGTAAACGACTTCGCAGGCCTTTCGGGGCGATG]

[+] EMBL CD086778             [GCCGTGTTTATAAGTAGCCTAATGGGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTGACTGGAACGTCATGCCATAGAGGGTGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGCCTCGGTACGTTCCATCAGAGTCGAGTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAACTTCCGCTAAAGCTAAATACGGACCAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGTCAGCTGAAGAGGCTGTTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCTTACTGCATCGGCACCTTGAGCATGGGAATCGTATTCACCGCGGATGCGCAGGCTATGCGGGGTTTTGCGGTTTCTGTGTGCTTGCACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCAGGGGTAAACGACTTCGCAGGCCTTTCGGGGCGATG]




>consensus_2421#1
GCCGTGTTTATAAGTAGCCTAATGGGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTG
ACTGGAACGTCATGCCATAGAGGGTGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGC
CTCGGTACGTTCCATCAGAGTCGAGTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAA
CTTCCGCTAAAGCTAAATACGGACCAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAG
GTGAAAAGTCAGCTGAAGAGGCTGTTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCT
TACTGCATCGGCACCTTGAGCATGGGAATCGTATTCACCGCGGATGCGCAGGCTATGCGG
GGTTTTGCGGTTTCTGTGTGCTTGCACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCA
GGGGTAAACGACTTCGCAGGCCTTTCGGGGCGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2421#0      CGGGAGAAGCTCAGGCTTGAAATCCTGGACTCGTCAGGGTCTGGGAGTTGTAGCCTAATG 60
consensus_2421#1      ---------------------------------GCCGTGTTTATAA---GTAGCCTAATG 24
                                                        * * ** *   *   ***********

consensus_2421#0      GGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTGACTGGAACGTCATGCCATAGAGGG 120
consensus_2421#1      GGATGTGCTTGGGATCGATTGACGCGGTGTAAGTTGACTGGAACGTCATGCCATAGAGGG 84
                      ************************************************************

consensus_2421#0      TGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGCCTCGGTACGTTCCATCAGAGTCGA 180
consensus_2421#1      TGATAGCCCCGTGATGCCGTGTCTTTAGGTCTCTGCCTCGGTACGTTCCATCAGAGTCGA 144
                      ************************************************************

consensus_2421#0      GTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAACTTCCGCTAAAGCTAAATACGGAC 240
consensus_2421#1      GTTGCTTGAGAGTGCAGCTCTAAGATGGCGGGTGAACTTCCGCTAAAGCTAAATACGGAC 204
                      ************************************************************

consensus_2421#0      CAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGTCAGCTGAAGAGGCTG 300
consensus_2421#1      CAGAGACCGATAGCGAACAAGTACTGTGAAGGAAAGGTGAAAAGTCAGCTGAAGAGGCTG 264
                      ************************************************************

consensus_2421#0      TTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCTTACTGCATCGGCACCTTGAGCATG 360
consensus_2421#1      TTGAAAAGTGCCTGAAAGAGTAGAGAGAGATCCCCTTACTGCATCGGCACCTTGAGCATG 324
                      ************************************************************

consensus_2421#0      GGAATCGTATTCACCGCGGATGCGCAGGCTATGCGGGGTTTTGCGGTTTCTGTGTGCTTG 420
consensus_2421#1      GGAATCGTATTCACCGCGGATGCGCAGGCTATGCGGGGTTTTGCGGTTTCTGTGTGCTTG 384
                      ************************************************************

consensus_2421#0      CACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCAGGGGTAAACGACTTCGCAGGCCTT 480
consensus_2421#1      CACCTTTGATGGCTTCGTGTAACAGCGTCGCCGTCAGGGGTAAACGACTTCGCAGGCCTT 444
                      ************************************************************

consensus_2421#0      TCGGGGCGATG 491
consensus_2421#1      TCGGGGCGATG 455
                      ***********