These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence [GTCGAAATGATAGACAATCATCTTCTGATATGAAAGGAGGAAATGAATTGACTGTTATGGATGGTAAATCAATTGAAAGTTATTCACATCATTCACAATATCAGCACACTGAATCTTCAACATCGCTTAGTAAACCATTAAACGAAATCCAGTCCAGTTCTGGAATTATGATGGGATTAACTTCTACTGCATTCAATCAATCTACATGTCAACAACGATTACCAAGTATTGCTCAAGCAATGTATGGTATATCTCAAACAATTACACCATCATTTGGATTATTAACACCTAATCCACCACCAAAAGGTCCAATATATAAATGGACTCCTGATGATGTTGTTGCATTTGT] [+] EMBL CD087056 [GTCGAAATGATAGACAATCATCTTCTGATATGAAAGGAGGAAATGAATTGACTGTTATGGATGGTAAATCAATTGAAAGTTATTCACATCATTCACAATATCAGCACACTGAATCTTCAACATCGCTTAGTAAACCATTAAACGAAATCCAGTCCAGTTCTGGAATTATGATGGGATTAACTTCTACTGCATTCAATCAATCTACATGTCAACAACGATTACCAAGTATTGCTCAAGCAATGTATGGTATATCTCAAACAATTACACCATCATTTGGATTATTAACACCTAATCCACCACCAAAAGGTCCAATATATAAATGGACTCCTGATGATGTTGTTGCATTTGT] consensusID : consensus_2432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [GGTTACAATTTAAATTAAGGGTATAAAGTTTAAATAAGTCAGCATAAAATATATATATATAGAAATAAATCTGTGTTTGTGTGTAGATTCCGGATTATTATTATTATTATTCTATTAAATAATGTTATCATTAACAACAATTCTTTAAAGATTCTAATCGTGCAACTAATTTCAAAGCTGGTCCTATTTTCATACCAATTGGTGGTTGAATAAATTGATCTTCAGCTAATAATAATAATGCTTCACCATCTATTTCATTATTTAAAAATGCTGATGCATATGCTCCACAACCAGGTGTACCACGAACAAATGCAACAACATCATCAGGAGTCCATTTAT] [+] EMBL CD114880 [GGTTACAATTTAAATTAAGGGTATAAAGTTTAAATAAGTCAGCATAAAATATATATATATAGAAATAAATCTGTGTTTGTGTGTAGATTCCGGATTATTATTATTATTATTCTATTAAATAATGTTATCATTAACAACAATTCTTTAAAGATTCTAATCGTGCAACTAATTTCAAAGCTGGTCCTATTTTCATACCAATTGGTGGTTGAATAAATTGATCTTCAGCTAATAATAATAATGCTTCACCATCTATTTCATTATTTAAAAATGCTGATGCATATGCTCCACAACCAGGTGTACCACGAACAAATGCAACAACATCATCAGGAGTCCATTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2432#0 GTCGAAATGATAGACAATCATCTTCTGATATGAAAGGAGGAAATGAATTGACTGT-TATG 59 consensus_2432#1 --GGTTACAATTTAAATTAAGGGTATAAAGTTTAAATAAGTCA-GCATAAAATATATATA 57 * * ** * * * * * * * * ** * * * * ** * * * *** consensus_2432#0 GATGGTAAATCAATTGAAAGTTATTCACATCATTCACAATATCAGCACACTGAATCTTCA 119 consensus_2432#1 TATAG-AAATAAATCTGTGTTTGTGTGTAGATTCCGGATTATTATTATTATTATTCTATT 116 ** * **** *** ** * * * * * *** * * * * *** consensus_2432#0 ACATCGCTTAGTAAACCATTAAACGAAATCCAGTCCAGTTCTGGAATTATGATGGGATTA 179 consensus_2432#1 AAATAATGTTAT----CATTAACAACAATTCTTTAAAGATTC----TAATCGTGCAACTA 168 * ** * * ****** *** * * ** * * ** ** * ** consensus_2432#0 ACTTCTACTGCATTCAATCAATCTACATGTCAAC-AACGATT--ACCAAGTATTGCTCAA 236 consensus_2432#1 ATTTCAA---AGCTGGTCCTATTTTCATACCAATTGGTGGTTGAATAAATTGATCTTCAG 225 * *** * * * ** * *** *** * ** * ** * * *** consensus_2432#0 GCAATGTATGGTATATCTCAAACAATTACACCATCATTTGGAT-TATTAACACCTAA--T 293 consensus_2432#1 CTAATA-ATAATAATGCTTCACCATCTATTTCATTATTTAAAAATGCTGATGCATATGCT 284 *** ** ** ** * ** ** *** **** * * * * * ** * consensus_2432#0 CCACCACCAAAAGGTCCAATATATAAATGGACTCCTGATGATGTTGTTGCATTTGT 349 consensus_2432#1 CCACAACCAGGTGTACCA-CGAACAAATGCAACAACATCATCAGGAGTCCATTTAT 339 **** **** * *** * ***** * * ***** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||