cluster # 244

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Schistosoma mansoni
cluster # 244 cluster # 244 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_244#0 length = 582 sequences # 1

consensus_244#1 length = 362 sequences # 1

consensusID : consensus_244#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [TTTTTGTCTTTTTTTTCCTCAGAAAAAAACGACATACCTAAGCTAATGCTTTTTAATCAAATGTTCTTAGTCATTTCTAGATTTGTTGATATTCTTGTTTTCATAATTTATTCCAATACTCATTACTTCATTTCAAACCCCAAGAAATCTGGTAATGTACAAAAGATTTTCCACCTGCTGGTATGTACATACTAGAGCATGGCATGGAAATTTATGTTAGCGTATATTTGTTCCAGGCTTTACGTTGATTACGACTGATTAAAGTTAGTACTAATCAAATATGGGTTATGAATTGCTCTGAGCTATCTAGATTATTTGATCTGTGAATAACACATACACATTTGTTTCTTAAATAAAGTCTTTGCATACATAATCTCAATAATAGTTCAAGGGTCAAAATAAAGCTCACAATGAAAGGAACATGAATATGACTAGTTTAATTATTTAGCAAATATACGATAAAAGTTATATGCATAATATTGACCCATAAATGGATCCCAAAGTTACCATTCACTATTGTTATCGGNGCATAACACTTACTATATCAGCTTATAGAATGGATAGGTAAGGGGGTCTTATCAT]

[+] EMBL CD094743             [TTTTTGTCTTTTTTTTCCTCAGAAAAAAACGACATACCTAAGCTAATGCTTTTTAATCAAATGTTCTTAGTCATTTCTAGATTTGTTGATATTCTTGTTTTCATAATTTATTCCAATACTCATTACTTCATTTCAAACCCCAAGAAATCTGGTAATGTACAAAAGATTTTCCACCTGCTGGTATGTACATACTAGAGCATGGCATGGAAATTTATGTTAGCGTATATTTGTTCCAGGCTTTACGTTGATTACGACTGATTAAAGTTAGTACTAATCAAATATGGGTTATGAATTGCTCTGAGCTATCTAGATTATTTGATCTGTGAATAACACATACACATTTGTTTCTTAAATAAAGTCTTTGCATACATAATCTCAATAATAGTTCAAGGGTCAAAATAAAGCTCACAATGAAAGGAACATGAATATGACTAGTTTAATTATTTAGCAAATATACGATAAAAGTTATATGCATAATATTGACCCATAAATGGATCCCAAAGTTACCATTCACTATTGTTATCGGNGCATAACACTTACTATATCAGCTTATAGAATGGATAGGTAAGGGGGTCTTATCAT]




>consensus_244#0
TTTTTGTCTTTTTTTTCCTCAGAAAAAAACGACATACCTAAGCTAATGCTTTTTAATCAA
ATGTTCTTAGTCATTTCTAGATTTGTTGATATTCTTGTTTTCATAATTTATTCCAATACT
CATTACTTCATTTCAAACCCCAAGAAATCTGGTAATGTACAAAAGATTTTCCACCTGCTG
GTATGTACATACTAGAGCATGGCATGGAAATTTATGTTAGCGTATATTTGTTCCAGGCTT
TACGTTGATTACGACTGATTAAAGTTAGTACTAATCAAATATGGGTTATGAATTGCTCTG
AGCTATCTAGATTATTTGATCTGTGAATAACACATACACATTTGTTTCTTAAATAAAGTC
TTTGCATACATAATCTCAATAATAGTTCAAGGGTCAAAATAAAGCTCACAATGAAAGGAA
CATGAATATGACTAGTTTAATTATTTAGCAAATATACGATAAAAGTTATATGCATAATAT
TGACCCATAAATGGATCCCAAAGTTACCATTCACTATTGTTATCGGNGCATAACACTTAC
TATATCAGCTTATAGAATGGATAGGTAAGGGGGTCTTATCAT

consensusID : consensus_244#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [TCCAAGAGAANCGGCGAGCGAAATTGGAGTATCCTTTACGTTTTAGCATCGAGTATATCAGAACGGAATGGAAAGCCCGGCCATAGCGGGTGATAGCCCCGTATGAGAAATGCTGCGGTGTGGAACTAAGCGTAAGACAAGTAGGGCGGGACACGAGAAATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCGTAATCGACCGATAGTGAACTAATACCGTGAGGGAAAGGCGAAAAGAACCCCGGGAGGGGAGTGAAATACATCCTGAAACCGCATGCATACAAAAAGTATGAGCCCGCAAGGGTGACTGCGTATCTTTTGTATAATGGGTCAGCGACTTACATTCAGT]

[+] EMBL CD087143             [TCCAAGAGAANCGGCGAGCGAAATTGGAGTATCCTTTACGTTTTAGCATCGAGTATATCAGAACGGAATGGAAAGCCCGGCCATAGCGGGTGATAGCCCCGTATGAGAAATGCTGCGGTGTGGAACTAAGCGTAAGACAAGTAGGGCGGGACACGAGAAATCCTGTCTGAATATGGGGGGACCATCCTCCAAGGCTAAATACTCGTAATCGACCGATAGTGAACTAATACCGTGAGGGAAAGGCGAAAAGAACCCCGGGAGGGGAGTGAAATACATCCTGAAACCGCATGCATACAAAAAGTATGAGCCCGCAAGGGTGACTGCGTATCTTTTGTATAATGGGTCAGCGACTTACATTCAGT]




>consensus_244#1
TCCAAGAGAANCGGCGAGCGAAATTGGAGTATCCTTTACGTTTTAGCATCGAGTATATCA
GAACGGAATGGAAAGCCCGGCCATAGCGGGTGATAGCCCCGTATGAGAAATGCTGCGGTG
TGGAACTAAGCGTAAGACAAGTAGGGCGGGACACGAGAAATCCTGTCTGAATATGGGGGG
ACCATCCTCCAAGGCTAAATACTCGTAATCGACCGATAGTGAACTAATACCGTGAGGGAA
AGGCGAAAAGAACCCCGGGAGGGGAGTGAAATACATCCTGAAACCGCATGCATACAAAAA
GTATGAGCCCGCAAGGGTGACTGCGTATCTTTTGTATAATGGGTCAGCGACTTACATTCA
GT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_244#0      TTTTTGTCTTTTTTTTCCTCAGAAAAAAACGACATACCTAAGCTAATGCTTTTTAATCAA 60
consensus_244#1      ------------------------------------------------------------
                                                                                 

consensus_244#0      ATGTTCTTAGTCATTTCTAGATTTGTTGATATTCTTGTTTTCATAATTTATTCCAATACT 120
consensus_244#1      ------------------------------------------------------------
                                                                                 

consensus_244#0      CATTACTTCATTTCAAACCCCAAGAAATCTGGTAATGTACAAAAGATTTTCCACCTGCTG 180
consensus_244#1      ------------------------------------------------------------
                                                                                 

consensus_244#0      GTATGTACATACTAGAGCAT-GGCATGGAAATTTATGTTAGCGTATATTTGTTCCAGGCT 239
consensus_244#1      ---------TCCAAGAGAANCGGCGAGCGAAATTGGAGTATCCTTTACGTTTT---AGCA 48
                              * * **** *  ***  *  ** **    ** * * **  * **    ** 

consensus_244#0      TTACGTTGATTACGACTGATTAAAGTTAGTACTAATCAAATATGGGTTATGAATTGCTCT 299
consensus_244#1      TCGAGTATATCAGAACGGAATGGA---AAGCCCGGCCATA-GCGGGTGATAGCCCCGTAT 104
                     *   **  ** *  ** ** *  *   *   *    ** *   **** **       * *

consensus_244#0      GAGCTATCTAGATTATTTGATCTGTGAATAACACATACACATTTGTTTCTTAAATAAAGT 359
consensus_244#1      GAGAAATGCTGCGGTGTGGAACTAAGCGTAAGACAAGTAGGGCGGGACACGAGAAATCCT 164
                     ***  **   *     * ** **  *  *** ***   *     *      * * *   *

consensus_244#0      CTTTGCATACATAATCTCAATAATAGTTCAAGGGTCAAAATAAAGCTCACAATGAAAGGA 419
consensus_244#1      GTCTGAATATGGGG---GGACCATCCTCCAAGGCT--AAATA---CTCGTAATCGACCGA 216
                      * ** ***          *  **  * ***** *  *****   ***  ***  *  **

consensus_244#0      ACATGAATATGACTAGTTTAATTATTTAGCAAATATACGATAAAAGTTATATGCATAATA 479
consensus_244#1      TAGTGAA----------CTAATACCGTGAGGGAAAGGCGAAAAGAACCCCGGG-AGGGGA 265
                        ****           ****    *     * *  *** ** *       * *    *

consensus_244#0      TTGACCCATAAATGGATCCCAAAGTTAC-CATTCACTATTGTTATCGGNGCATAACACTT 538
consensus_244#1      GTGA------AATACATCCTGAAACCGCATGCATACAAAAAGTATGAGCCCGCAAGGGTG 319
                      ***      ***  ****  **    *      ** *    ***  *  *  **   * 

consensus_244#0      ACTATAT-CAGCTTATAGAATGGATAGGTAAGGGGGTCTTATCAT 582
consensus_244#1      ACTGCGTATCTTTTGTATAATGGGTCAGCGACTTACATTCAGT-- 362
                     ***   *     ** ** ***** *  *  *       * *