cluster # 2446

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Schistosoma mansoni
cluster # 2446 cluster # 2446 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2446#0 length = 276 sequences # 1

consensus_2446#1 length = 144 sequences # 1

consensusID : consensus_2446#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [CAGCTTATAGATGAAATGAACAGGAACAAAAAAGCTTGTAAAAGGAACAGTATTTCACATCACAATTATACAAATATTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGCGTAATAAAAATGTTCAAATGTGTTTTAAAAATCAACATACATGAACACAAAATCAGAATAGTGACTCGACCATGTAAATTGATAGCTATATCTATGTTATATCGTACAGTGCGTGAGTGCCCTGTTTGATATATGAACGTGCTGATTCCCGCCAATGATA]

[+] EMBL CD087308             [CAGCTTATAGATGAAATGAACAGGAACAAAAAAGCTTGTAAAAGGAACAGTATTTCACATCACAATTATACAAATATTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGCGTAATAAAAATGTTCAAATGTGTTTTAAAAATCAACATACATGAACACAAAATCAGAATAGTGACTCGACCATGTAAATTGATAGCTATATCTATGTTATATCGTACAGTGCGTGAGTGCCCTGTTTGATATATGAACGTGCTGATTCCCGCCAATGATA]




>consensus_2446#0
CAGCTTATAGATGAAATGAACAGGAACAAAAAAGCTTGTAAAAGGAACAGTATTTCACAT
CACAATTATACAAATATTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGCGTAA
TAAAAATGTTCAAATGTGTTTTAAAAATCAACATACATGAACACAAAATCAGAATAGTGA
CTCGACCATGTAAATTGATAGCTATATCTATGTTATATCGTACAGTGCGTGAGTGCCCTG
TTTGATATATGAACGTGCTGATTCCCGCCAATGATA

consensusID : consensus_2446#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 144
fasta sequence

                              [TGAACAGGATTAAAGGAGCTTGTATTAGGAACAGTATTTCACATCACAATTATACAAATATTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGTGTAATAAAAATGTTCAAATGTCTTTGGACAATTAGCATTCATGA]

[+] EMBL CD087348             [TGAACAGGATTAAAGGAGCTTGTATTAGGAACAGTATTTCACATCACAATTATACAAATATTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGTGTAATAAAAATGTTCAAATGTCTTTGGACAATTAGCATTCATGA]




>consensus_2446#1
TGAACAGGATTAAAGGAGCTTGTATTAGGAACAGTATTTCACATCACAATTATACAAATA
TTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGTGTAATAAAAATGTTCAAATG
TCTTTGGACAATTAGCATTCATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2446#0      CAGCTTATAGATGAAATGAACAGGAACAAAAAAGCTTGTAAAAGGAACAGTATTTCACAT 60
consensus_2446#1      ----------------TGAACAGGATTAAAGGAGCTTGTATTAGGAACAGTATTTCACAT 44
                                      *********  ***  ********  ******************

consensus_2446#0      CACAATTATACAAATATTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGCGTAA 120
consensus_2446#1      CACAATTATACAAATATTTGCTAAAATTGTGAGTTTTAGTGAGGACTACCTTTAGTGTAA 104
                      ******************************************************* ****

consensus_2446#0      TAAAAATGTTCAAATGTGTTTTAAAAATCAACATACATGAACACAAAATCAGAATAGTGA 180
consensus_2446#1      TAAAAATGTTCAAATGTCTTTGGACAATTAGCATTCATGA-------------------- 144
                      ***************** ***  * *** * *** *****                    

consensus_2446#0      CTCGACCATGTAAATTGATAGCTATATCTATGTTATATCGTACAGTGCGTGAGTGCCCTG 240
consensus_2446#1      ------------------------------------------------------------
                                                                                  

consensus_2446#0      TTTGATATATGAACGTGCTGATTCCCGCCAATGATA 276
consensus_2446#1      ------------------------------------