These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [TATTAACAGTACTACCGAAAATGAGATTTCAGTTAGTGATAACGAACTCAAACAGTATTGCACACTGTTCACTGAATACAAAAATAGGGTTAGATATAAATGTAAAGGAATAAAAACAACTATTTAGATACAGATACAGTCAGTCATACACTAAACACACAACTATTGTATATATACCGAAAAGAAATATTGAATCAGATACAATGAAAGATGAAAGCGGTTTGTTCAAAAATAGTACTTTTGTGACATTATTAAATACTCTAAATATATAAGAAGCACGTGTATTTCAAATAGCAAAATAATCAAAATATAAAGCGCGTTCACAATTCATTTTAAACATACGCGCATATGTGTGTAGTCCTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATAATTTAAATATGTTATAACCATGTGTAAGGTGCACTAAAAACCT] [+] EMBL CD196914 [TATTAACAGTACTACCGAAAATGAGATTTCAGTTAGTGATAACGAACTCAAACAGTATTGCACACTGTTCACTGAATACAAAAATAGGGTTAGATATAAATGTAAAGGAATAAAAACAACTATTTAGATACAGATACAGTCAGTCATACACTAAACACACAACTATTGTATATATACCGAAAAGAAATATTGAATCAGATACAATGAAAGATGAAAGCGGTTTGTTCAAAAATAGTACTTTTGTGACATTATTAAATACTCTAAATATATAAGAAGCACGTGTATTTCAAATAGCAAAATAATCAAAATATAAAGCGCGTTCACAATTCATTTTAAACATACGCGCATATGTGTGTAGTCCTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATAATTTAAATATGTTATAACCATGTGTAAGGTGCACTAAAAACCT] consensusID : consensus_2450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 109 fasta sequence [TACCTTCGCTGTTGTGTGTAGTCCTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATAATTTAAATATGTTATAACCATGTGTAAGGTGCACTAAAAACCTTTGAAC] [+] EMBL CD087370 [TACCTTCGCTGTTGTGTGTAGTCCTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATAATTTAAATATGTTATAACCATGTGTAAGGTGCACTAAAAACCTTTGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2450#0 TATTAACAGTACTACCGAAAATGAGATTTCAGTTAGTGATAACGAACTCAAACAGTATTG 60 consensus_2450#1 ------------------------------------------------------------ consensus_2450#0 CACACTGTTCACTGAATACAAAAATAGGGTTAGATATAAATGTAAAGGAATAAAAACAAC 120 consensus_2450#1 ------------------------------------------------------------ consensus_2450#0 TATTTAGATACAGATACAGTCAGTCATACACTAAACACACAACTATTGTATATATACCGA 180 consensus_2450#1 ------------------------------------------------------------ consensus_2450#0 AAAGAAATATTGAATCAGATACAATGAAAGATGAAAGCGGTTTGTTCAAAAATAGTACTT 240 consensus_2450#1 ------------------------------------------------------------ consensus_2450#0 TTGTGACATTATTAAATACTCTAAATATATAAGAAGCACGTGTATTTCAAATAGCAAAAT 300 consensus_2450#1 ------------------------------------------------------------ consensus_2450#0 AATCAAAATATAAAGCGCGTTCACAATTCATTTTAAACATACGCGCATATGTGTGTAGTC 360 consensus_2450#1 -------------------------------------TACCTTCGCTGTTGTGTGTAGTC 23 * *** *********** consensus_2450#0 CTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATAATTTAAATATGTTATAACCATGT 420 consensus_2450#1 CTTGTAATTTAGAGATAGGAAGACTTGTTTAGAGATAATTTAAATATGTTATAACCATGT 83 ************************************************************ consensus_2450#0 GTAAGGTGCACTAAAAACCT------ 440 consensus_2450#1 GTAAGGTGCACTAAAAACCTTTGAAC 109 ******************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||