cluster # 2463

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Schistosoma mansoni
cluster # 2463 cluster # 2463 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2463#0 length = 393 sequences # 1

consensus_2463#1 length = 216 sequences # 1

consensusID : consensus_2463#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [TGTACTTGCTTTAGCTGATGAGATAGACTCACTCTTACGAGGAGTGGCTAACTGCTTAAGTCTGTCTGCATCTGAGTAGCGAATGATCTGTGTTAGTTTGTTAGTAGACACAGCACCAGCTTGAATAGCTGCCCACTCATCATCGTCAATGCTAATCCTTACCTTCTTACCAGAAGCTCCAACTTGTACACGAGCTGCTGCAATAGATTGTTGCTTAAGCTTCTTAAGTTGGTCTGGGCTGCATGTCAGGAGTCGTTTAGATGCCATANNGTCTGTAGCAAATCAGTGAGCTTGGCGTTCTTAGGAGCATTCATTAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTGAGGNCTGCACTTAAATCTAGCTTNCTTACTGANGNGCATG]

[+] EMBL CD087948             [TGTACTTGCTTTAGCTGATGAGATAGACTCACTCTTACGAGGAGTGGCTAACTGCTTAAGTCTGTCTGCATCTGAGTAGCGAATGATCTGTGTTAGTTTGTTAGTAGACACAGCACCAGCTTGAATAGCTGCCCACTCATCATCGTCAATGCTAATCCTTACCTTCTTACCAGAAGCTCCAACTTGTACACGAGCTGCTGCAATAGATTGTTGCTTAAGCTTCTTAAGTTGGTCTGGGCTGCATGTCAGGAGTCGTTTAGATGCCATANNGTCTGTAGCAAATCAGTGAGCTTGGCGTTCTTAGGAGCATTCATTAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTGAGGNCTGCACTTAAATCTAGCTTNCTTACTGANGNGCATG]




>consensus_2463#0
TGTACTTGCTTTAGCTGATGAGATAGACTCACTCTTACGAGGAGTGGCTAACTGCTTAAG
TCTGTCTGCATCTGAGTAGCGAATGATCTGTGTTAGTTTGTTAGTAGACACAGCACCAGC
TTGAATAGCTGCCCACTCATCATCGTCAATGCTAATCCTTACCTTCTTACCAGAAGCTCC
AACTTGTACACGAGCTGCTGCAATAGATTGTTGCTTAAGCTTCTTAAGTTGGTCTGGGCT
GCATGTCAGGAGTCGTTTAGATGCCATANNGTCTGTAGCAAATCAGTGAGCTTGGCGTTC
TTAGGAGCATTCATTAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTGAGGNCTG
CACTTAAATCTAGCTTNCTTACTGANGNGCATG

consensusID : consensus_2463#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence

                              [AGCTCCAACTTGTACACGAGCTGCTGCAATAGATTGTGCTTAAGCNTTCTTAAGTTGGTCTGGCTGCATGTCAGGAGTTCGTTTAGATGCAATGGTTCTGTTAGCAATCAGTTGAGCTTGGCGTTCTTTAGGAGCATTCATAAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTGAGGTCTGTACTTAATCTTAGCTTCCTTACTCATGTG]

[-] EMBL CD087879             [AGCTCCAACTTGTACACGAGCTGCTGCAATAGATTGTGCTTAAGCNTTCTTAAGTTGGTCTGGCTGCATGTCAGGAGTTCGTTTAGATGCAATGGTTCTGTTAGCAATCAGTTGAGCTTGGCGTTCTTTAGGAGCATTCATAAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTGAGGTCTGTACTTAATCTTAGCTTCCTTACTCATGTG]




>consensus_2463#1
AGCTCCAACTTGTACACGAGCTGCTGCAATAGATTGTGCTTAAGCNTTCTTAAGTTGGTC
TGGCTGCATGTCAGGAGTTCGTTTAGATGCAATGGTTCTGTTAGCAATCAGTTGAGCTTG
GCGTTCTTTAGGAGCATTCATAAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTG
AGGTCTGTACTTAATCTTAGCTTCCTTACTCATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2463#0      TGTACTTGCTTTAGCTGATGAGATAGACTCACTCTTACGAGGAGTGGCTAACTGCTTAAG 60
consensus_2463#1      ------------------------------------------------------------
                                                                                  

consensus_2463#0      TCTGTCTGCATCTGAGTAGCGAATGATCTGTGTTAGTTTGTTAGTAGACACAGCACCAGC 120
consensus_2463#1      ------------------------------------------------------------
                                                                                  

consensus_2463#0      TTGAATAGCTGCCCACTCATCATCGTCAATGCTAATCCTTACCTTCTTACCAGAAGCTCC 180
consensus_2463#1      ------------------------------------------------------AGCTCC 6
                                                                            ******

consensus_2463#0      AACTTGTACACGAGCTGCTGCAATAGATTGTTGCTTAAGCTT-CTTAAGTTGGTCTGGGC 239
consensus_2463#1      AACTTGTACACGAGCTGCTGCAATAGATTGT-GCTTAAGCNTTCTTAAGTTGGTCTGG-C 64
                      ******************************* ******** * *************** *

consensus_2463#0      TGCATGTCAGGAGT-CGTTTAGATGCCATANNGTCTGTAGCAAATCAGTGAGCTTGGCGT 298
consensus_2463#1      TGCATGTCAGGAGTTCGTTTAGATGCAATGGTTCTGTTAGCAATCAGTTGAGCTTGGCGT 124
                      ************** *********** **        ******     ************

consensus_2463#0      TCTT-AGGAGCATTCATTAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTGAGGN 357
consensus_2463#1      TCTTTAGGAGCATTCATAAGAGCATCACTAAGCTTCTTATCTAGAGACTCTAGCTGAGGT 184
                      **** ************ ***************************************** 

consensus_2463#0      CTGCACTTAAATCTAGCTTNCTTACTGANGNGCATG 393
consensus_2463#1      CTGTACTTAATCTTAGCTTCCTTACTCATGTG---- 216
                      *** ******   ****** ****** * * *