cluster # 2473

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2473 cluster # 2473 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2473#0 length = 276 sequences # 1

consensus_2473#1 length = 274 sequences # 1

consensusID : consensus_2473#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [GTCAGTATAGTCCCTATCTTCTGGTGGGACATATAGGCGAAGAAGAACATCTGGTTAGTACGAAAGGACCATCAGGTGCGCACCTCTGGTGTATCTGCTATAGTTCATTGACTGTACTGCAGAGTAGCTACGTGCGTTAAGGATAAGACCTGAAAGCATATAAGGTCGAAGCTGCTCTTTGGAGACTAAACAGCAACGGGATGTAGACCACGTCCTTGATAGGTCACATGTGTAAGCTCCGTTAAGGAGTGAGCTGAGTGATACTAATGTGTTGCA]

[+] EMBL CD088217             [GTCAGTATAGTCCCTATCTTCTGGTGGGACATATAGGCGAAGAAGAACATCTGGTTAGTACGAAAGGACCATCAGGTGCGCACCTCTGGTGTATCTGCTATAGTTCATTGACTGTACTGCAGAGTAGCTACGTGCGTTAAGGATAAGACCTGAAAGCATATAAGGTCGAAGCTGCTCTTTGGAGACTAAACAGCAACGGGATGTAGACCACGTCCTTGATAGGTCACATGTGTAAGCTCCGTTAAGGAGTGAGCTGAGTGATACTAATGTGTTGCA]




>consensus_2473#0
GTCAGTATAGTCCCTATCTTCTGGTGGGACATATAGGCGAAGAAGAACATCTGGTTAGTA
CGAAAGGACCATCAGGTGCGCACCTCTGGTGTATCTGCTATAGTTCATTGACTGTACTGC
AGAGTAGCTACGTGCGTTAAGGATAAGACCTGAAAGCATATAAGGTCGAAGCTGCTCTTT
GGAGACTAAACAGCAACGGGATGTAGACCACGTCCTTGATAGGTCACATGTGTAAGCTCC
GTTAAGGAGTGAGCTGAGTGATACTAATGTGTTGCA

consensusID : consensus_2473#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 274
fasta sequence

                              [TAGCCGGAGACTAAGTGGCTATGAAGAGCCAATAACAGCATAATGGCAAAAGTGTGCTAAACTGTAAGACTGACAGGTCAATCAGGTACGTAAGTAGGGCATAGTGAACCGATAGTATGTTATGGTACAGCTATCGTTCATCGGATAAGTTACGCTAGGGATAACAGGCTGATAGCGCGAAAGAGTTCATATCGTAAGCGCTGTTTGGCACCTCGATGTCGACTCATCACATCCTCCCGGTGTATCAGCTGGGAAGGTTTCAACTGTTCGTTGA]

[+] EMBL CD088242             [TAGCCGGAGACTAAGTGGCTATGAAGAGCCAATAACAGCATAATGGCAAAAGTGTGCTAAACTGTAAGACTGACAGGTCAATCAGGTACGTAAGTAGGGCATAGTGAACCGATAGTATGTTATGGTACAGCTATCGTTCATCGGATAAGTTACGCTAGGGATAACAGGCTGATAGCGCGAAAGAGTTCATATCGTAAGCGCTGTTTGGCACCTCGATGTCGACTCATCACATCCTCCCGGTGTATCAGCTGGGAAGGTTTCAACTGTTCGTTGA]




>consensus_2473#1
TAGCCGGAGACTAAGTGGCTATGAAGAGCCAATAACAGCATAATGGCAAAAGTGTGCTAA
ACTGTAAGACTGACAGGTCAATCAGGTACGTAAGTAGGGCATAGTGAACCGATAGTATGT
TATGGTACAGCTATCGTTCATCGGATAAGTTACGCTAGGGATAACAGGCTGATAGCGCGA
AAGAGTTCATATCGTAAGCGCTGTTTGGCACCTCGATGTCGACTCATCACATCCTCCCGG
TGTATCAGCTGGGAAGGTTTCAACTGTTCGTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2473#0      -GTCAGTATAGTCCCTATCTTCTGGTGGGACATATAGGCGAAGAAGAACATCTGGTTAGT 59
consensus_2473#1      TAGCCGGAGACTAAGTGGCTATGAAGAGCCAATAACAGCATAATGGCAAAAGTGTGCTAA 60
                         * * * * *   *  **       *   ***   **  *   * * *  **      

consensus_2473#0      ACGAAAGGACCATCAGGTGCGCACCTCTGGTGTATCTGCTATAGTTCATTGACTGTAC-- 117
consensus_2473#1      ACTGTAAGACTGACAGGTCAATCAGGTACGTAAGTAGGGCATAGTGAACCGATAGTATGT 120
                      **   * ***   *****           **   *  *  *****  *  **  ***   

consensus_2473#0      TGCAGAGTAGCTA-CGTGCGTTAAGGATAAGACCTGA-AAGCATATAAGGTCGAAGCTGC 175
consensus_2473#1      TATGGTACAGCTATCGTTCATC--GGATAAGTTACGCTAGGGATAACAGGCTGA--TAGC 176
                      *   *   ***** *** * *   *******    *  * * ***  ***  **    **

consensus_2473#0      TCTTTGGAGACTAAACAGCAACGGGATGTAGACCACGTCCTTGATAGGTCACATGTGTAA 235
consensus_2473#1      GCGAAAGAGTTCATATCGTAA-GCGCTGTTTGGCACCTCGATGTCGACTCAT-CACATCC 234
                       *    ***   * *  * ** * * ***    *** **  **     ***      *  

consensus_2473#0      GCTCCGTTAAGGAGTGAGCTGAGTGATACTAATGTGTTGCA 276
consensus_2473#1      TCCCGGTGTATCAGCTGGGAAGGTTTCAACTGTTCGTTGA- 274
                       * * **  *  **   *    **   *    *  ****