cluster # 2493

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Schistosoma mansoni
cluster # 2493 cluster # 2493 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2493#0 length = 391 sequences # 1

consensus_2493#1 length = 231 sequences # 1

consensusID : consensus_2493#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [TTATAAACCTTATATGCCTATCAACTGATAGTTAGATAATTATGACGTGGTTACAGTTAGAAATAATTTGTGTCCCAGATTGCCATGTCTTTATGCATTAAACCAACAAAAAAAAGAGTTTAGCTAGGTATATTAAGCAAATACTTTCACAATAACACTTAGAACAATCACCATAGTTTTTTTACAATATTTATGGTAATAACCTCAAAATTTATTATAAGAGTTAAAGGAAAAACCACGGTTATCATCATGTCAACCCAACAAACTAGATAATATCAAATTTAAAGCAATTAGTCCCCTTTGATAAATTTCGATAATGTAATGAGAAGACGAAGATTATCCCAACTATGTGATGATGCATTAGGGCAATACATTTTGAACAATCTGATCA]

[+] EMBL CD088572             [TTATAAACCTTATATGCCTATCAACTGATAGTTAGATAATTATGACGTGGTTACAGTTAGAAATAATTTGTGTCCCAGATTGCCATGTCTTTATGCATTAAACCAACAAAAAAAAGAGTTTAGCTAGGTATATTAAGCAAATACTTTCACAATAACACTTAGAACAATCACCATAGTTTTTTTACAATATTTATGGTAATAACCTCAAAATTTATTATAAGAGTTAAAGGAAAAACCACGGTTATCATCATGTCAACCCAACAAACTAGATAATATCAAATTTAAAGCAATTAGTCCCCTTTGATAAATTTCGATAATGTAATGAGAAGACGAAGATTATCCCAACTATGTGATGATGCATTAGGGCAATACATTTTGAACAATCTGATCA]




>consensus_2493#0
TTATAAACCTTATATGCCTATCAACTGATAGTTAGATAATTATGACGTGGTTACAGTTAG
AAATAATTTGTGTCCCAGATTGCCATGTCTTTATGCATTAAACCAACAAAAAAAAGAGTT
TAGCTAGGTATATTAAGCAAATACTTTCACAATAACACTTAGAACAATCACCATAGTTTT
TTTACAATATTTATGGTAATAACCTCAAAATTTATTATAAGAGTTAAAGGAAAAACCACG
GTTATCATCATGTCAACCCAACAAACTAGATAATATCAAATTTAAAGCAATTAGTCCCCT
TTGATAAATTTCGATAATGTAATGAGAAGACGAAGATTATCCCAACTATGTGATGATGCA
TTAGGGCAATACATTTTGAACAATCTGATCA

consensusID : consensus_2493#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence

                              [TATGGAGATTTCCATAATCCAGTCAACCACTAGAAGAAATACAAAGGAGTGGGGTTTGAATTTTCGCATGGCTAAGGTTTCAATAAACCTTAGTATACGCCTTTTTACACTTTTAATCTTCGTCTTCTCATTACATTATCGAAATTTATCAAAGGGACTAATTGCTTTAAAGAAATAATAAGTGGTAAACTGCTCCACTTCTTTCAGATCTTCATTGAGTGTGATTGCGTT]

[+] EMBL CD190980             [TATGGAGATTTCCATAATCCAGTCAACCACTAGAAGAAATACAAAGGAGTGGGGTTTGAATTTTCGCATGGCTAAGGTTTCAATAAACCTTAGTATACGCCTTTTTACACTTTTAATCTTCGTCTTCTCATTACATTATCGAAATTTATCAAAGGGACTAATTGCTTTAAAGAAATAATAAGTGGTAAACTGCTCCACTTCTTTCAGATCTTCATTGAGTGTGATTGCGTT]




>consensus_2493#1
TATGGAGATTTCCATAATCCAGTCAACCACTAGAAGAAATACAAAGGAGTGGGGTTTGAA
TTTTCGCATGGCTAAGGTTTCAATAAACCTTAGTATACGCCTTTTTACACTTTTAATCTT
CGTCTTCTCATTACATTATCGAAATTTATCAAAGGGACTAATTGCTTTAAAGAAATAATA
AGTGGTAAACTGCTCCACTTCTTTCAGATCTTCATTGAGTGTGATTGCGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2493#0      TTATAAACCTTATATGCCTATCAACTGATAGTTAGATAATTATGACGTGGTTACAGTTAG 60
consensus_2493#1      ------------------------------------------------------------
                                                                                  

consensus_2493#0      AAATAATTTGTGTCCCAGATTGCCATGTCT---TTATGCATTAAACCAACAAAAAAAAGA 117
consensus_2493#1      --------TATG---GAGATTTCCATAATCCAGTCAACCACTAGAAGAA-ATACAAAGGA 48
                              * **    ***** ****       * *  ** ** *  ** * * *** **

consensus_2493#0      GTTTAGCTAGGTATATTAAGCAAATACTTTCACAATAACACTTAGAACAATCACCATAGT 177
consensus_2493#1      GTGGGGTTTGAATTTTCGCATGGCTAAGGTTTCAATAAACCTTAGTATAC--------GC 100
                      **   * * *   * *        **   *  ******  ***** * *         * 

consensus_2493#0      TTTTTTACAATATTTATGGTAATAACCTCAAAATTTATTATAAGAGTTAAAGGAAAAACC 237
consensus_2493#1      CTTTTTACACTTTTAATCTTCGTCTTCTCATTAC--ATTATCGAAATTTATCAAAGGGAC 158
                       ******** * ** **  *  *   ****  *   *****   * ** *   **    *

consensus_2493#0      ACGGTTATCATCATGTCAACCCAACAAACTAGATAATATCAAATTTAAAGCAATTAGTCC 297
consensus_2493#1      ----TAATTGCTTTAAAGAAATAATAAGTGGTAAACTGCTCCACTT----CTTTCAGATC 210
                          * **     *    *   ** **     * * *     * **    *  * **  *

consensus_2493#0      CCTTTGATAAATTTCGATAATGTAATGAGAAGACGAAGATTATCCCAACTATGTGATGAT 357
consensus_2493#1      ---TTCATTGAGTGTGATTGCGTT------------------------------------ 231
                         ** **  * *  ***   **                                     

consensus_2493#0      GCATTAGGGCAATACATTTTGAACAATCTGATCA 391
consensus_2493#1      ----------------------------------