These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2514#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [ACATTTTCCACNAGTCACANAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTGATCTGCCTGTTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTCATTTTGACAAATTGATGACTTTGAAACACAGCTACTTGACCCAGCAGGATATACAGATGAATTATCCCACGAAGGCATTTTTAAATGGCTAAATGAGGTAGAATAGTTAATTTTTTCCGACGATCTATCAGCAATTGATGGTAATGGTGCTGG] [+] EMBL CD065936 [ACATTTTCCACNAGTCACANAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTGATCTGCCTGTTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTCATTTTGACAAATTGATGACTTTGAAACACAGCTACTTGACCCAGCAGGATATACAGATGAATTATCCCACGAAGGCATTTTTAAATGGCTAAATGAGGTAGAATAGTTAATTTTTTCCGACGATCTATCAGCAATTGATGGTAATGGTGCTGG] consensusID : consensus_2514#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence [TCGAAGCAATAAACTCCCTTTCGACATTGAACATGGAGTGGATGATGTGGAATTTGAAATAGGTGTCACAGAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTGATCTGCCTGTTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTCATTTTGACAAATTGATGACTTTGAAACACAGCTACTTGAC] [-] EMBL BG930541 [TCGAAGCAATAAACTCCCTTTCGACATTGAACATGGAGTGGATGATGTGGAATTTGAAATAGGTGTCACAGAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTGATCTGCCTGTTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTCATTTTGACAAATTGATGACTTTGAAACACAGCTACTTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2514#0 -------------------------------------------------ACATTTTCCAC 11 consensus_2514#1 TCGAAGCAATAAACTCCCTTTCGACATTGAACATGGAGTGGATGATGTGGAATTTGAAAT 60 **** * consensus_2514#0 NAGT--CACANAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTGATCTGCCTG 69 consensus_2514#1 AGGTGTCACAGAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTGATCTGCCTG 120 ** **** ************************************************* consensus_2514#0 TTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTCATTTTGACA 129 consensus_2514#1 TTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTCATTTTGACA 180 ************************************************************ consensus_2514#0 AATTGATGACTTTGAAACACAGCTACTTGACCCAGCAGGATATACAGATGAATTATCCCA 189 consensus_2514#1 AATTGATGACTTTGAAACACAGCTACTTGAC----------------------------- 211 ******************************* consensus_2514#0 CGAAGGCATTTTTAAATGGCTAAATGAGGTAGAATAGTTAATTTTTTCCGACGATCTATC 249 consensus_2514#1 ------------------------------------------------------------ consensus_2514#0 AGCAATTGATGGTAATGGTGCTGG 273 consensus_2514#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||