cluster # 2514

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Schistosoma mansoni
cluster # 2514 cluster # 2514 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2514#0 length = 273 sequences # 1

consensus_2514#1 length = 211 sequences # 1

consensusID : consensus_2514#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [ACATTTTCCACNAGTCACANAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTGATCTGCCTGTTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTCATTTTGACAAATTGATGACTTTGAAACACAGCTACTTGACCCAGCAGGATATACAGATGAATTATCCCACGAAGGCATTTTTAAATGGCTAAATGAGGTAGAATAGTTAATTTTTTCCGACGATCTATCAGCAATTGATGGTAATGGTGCTGG]

[+] EMBL CD065936             [ACATTTTCCACNAGTCACANAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTGATCTGCCTGTTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTCATTTTGACAAATTGATGACTTTGAAACACAGCTACTTGACCCAGCAGGATATACAGATGAATTATCCCACGAAGGCATTTTTAAATGGCTAAATGAGGTAGAATAGTTAATTTTTTCCGACGATCTATCAGCAATTGATGGTAATGGTGCTGG]




>consensus_2514#0
ACATTTTCCACNAGTCACANAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTG
ATCTGCCTGTTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTC
ATTTTGACAAATTGATGACTTTGAAACACAGCTACTTGACCCAGCAGGATATACAGATGA
ATTATCCCACGAAGGCATTTTTAAATGGCTAAATGAGGTAGAATAGTTAATTTTTTCCGA
CGATCTATCAGCAATTGATGGTAATGGTGCTGG

consensusID : consensus_2514#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence

                              [TCGAAGCAATAAACTCCCTTTCGACATTGAACATGGAGTGGATGATGTGGAATTTGAAATAGGTGTCACAGAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTGATCTGCCTGTTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTCATTTTGACAAATTGATGACTTTGAAACACAGCTACTTGAC]

[-] EMBL BG930541             [TCGAAGCAATAAACTCCCTTTCGACATTGAACATGGAGTGGATGATGTGGAATTTGAAATAGGTGTCACAGAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTGATCTGCCTGTTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTCATTTTGACAAATTGATGACTTTGAAACACAGCTACTTGAC]




>consensus_2514#1
TCGAAGCAATAAACTCCCTTTCGACATTGAACATGGAGTGGATGATGTGGAATTTGAAAT
AGGTGTCACAGAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTGATCTGCCTG
TTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTCATTTTGACA
AATTGATGACTTTGAAACACAGCTACTTGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2514#0      -------------------------------------------------ACATTTTCCAC 11
consensus_2514#1      TCGAAGCAATAAACTCCCTTTCGACATTGAACATGGAGTGGATGATGTGGAATTTGAAAT 60
                                                                         ****   * 

consensus_2514#0      NAGT--CACANAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTGATCTGCCTG 69
consensus_2514#1      AGGTGTCACAGAGCTTGAATCAGATATGTCACAATAAAATGACTGTGATTGATCTGCCTG 120
                        **  **** *************************************************

consensus_2514#0      TTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTCATTTTGACA 129
consensus_2514#1      TTTAAAAGCATTTGATGATTGGTTTACATTTGTTTGTGAAGAAGTCAACTCATTTTGACA 180
                      ************************************************************

consensus_2514#0      AATTGATGACTTTGAAACACAGCTACTTGACCCAGCAGGATATACAGATGAATTATCCCA 189
consensus_2514#1      AATTGATGACTTTGAAACACAGCTACTTGAC----------------------------- 211
                      *******************************                             

consensus_2514#0      CGAAGGCATTTTTAAATGGCTAAATGAGGTAGAATAGTTAATTTTTTCCGACGATCTATC 249
consensus_2514#1      ------------------------------------------------------------
                                                                                  

consensus_2514#0      AGCAATTGATGGTAATGGTGCTGG 273
consensus_2514#1      ------------------------