These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [AGAGTTTGATCCTGGCTCAGAATCAACGCTGGCGGCGTGCCTCAGACATGCAAGTCGTACGTGAAAGTCCTTCGGGATGAGTAAAGTGGCGCACGGGTGAGTAACACGTGAGTAATTTGCCTTTGGGTGGGGAATACCAACCGGAAACGGTTGTTAATACCGCATAACGCTTACGCTGTAATGGCGTAGGTTAAAGCGGGGGATCGCAAGACCTCGCGCCTGAAGAGAAGCTCGCGGCAGATTAGGTAGTTGGTGAGGTAATGGCTCACCAAGCCTGCGATCTGTAGCCGGCCTGAGAGGGCGGTCGGCCACACTGACACTGACATACGGGTCAGACTCCTACGGGAGGCAGCAGTCGGGAATTTTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAAGGATGAAGCATTTCGGTGTGTAAACTTCGCAAGAATAGGAAGAATAAGTTTGAACGAATAGTTCATACGATGACGGTACTATTTATAAGCTCCGGCTAACT] [+] EMBL CD158897 [AGAGTTTGATCCTGGCTCAGAATCAACGCTGGCGGCGTGCCTCAGACATGCAAGTCGTACGTGAAAGTCCTTCGGGATGAGTAAAGTGGCGCACGGGTGAGTAACACGTGAGTAATTTGCCTTTGGGTGGGGAATACCAACCGGAAACGGTTGTTAATACCGCATAACGCTTACGCTGTAATGGCGTAGGTTAAAGCGGGGGATCGCAAGACCTCGCGCCTGAAGAGAAGCTCGCGGCAGATTAGGTAGTTGGTGAGGTAATGGCTCACCAAGCCTGCGATCTGTAGCCGGCCTGAGAGGGCGGTCGGCCACACTGACACTGACATACGGGTCAGACTCCTACGGGAGGCAGCAGTCGGGAATTTTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAAGGATGAAGCATTTCGGTGTGTAAACTTCGCAAGAATAGGAAGAATAAGTTTGAACGAATAGTTCATACGATGACGGTACTATTTATAAGCTCCGGCTAACT] consensusID : consensus_2540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence [AGTTTGATCCTGGCTCAGATTGAGCGCTGGCGGCATGCCTTACACATGCAAGTCGAACGGTAACGCGGGGCAACCTGGCGATGAGTGGCGAACGGGTGAGTAATATATAGAACGTGTCCATGAGTGGGGGATAGCCCGGCGATAGCCGGATTAATACGGCATAAGACGCGAGGGTGAAAGCGGGGGATATTAGGACCTCGCGTTGATGGAGCGGCCGATACCAGATTAGGTAGTTGGTGAGGTAAAGGCTCACCAAGCCTGCGCTCTGTAGTTGGTTTGAGAGGAGTGGCTCAGCCGACGGTGGGAATTGAGAGCTCGGTCCAGACTCCTACG] [-] EMBL CD089351 [AGTTTGATCCTGGCTCAGATTGAGCGCTGGCGGCATGCCTTACACATGCAAGTCGAACGGTAACGCGGGGCAACCTGGCGATGAGTGGCGAACGGGTGAGTAATATATAGAACGTGTCCATGAGTGGGGGATAGCCCGGCGATAGCCGGATTAATACGGCATAAGACGCGAGGGTGAAAGCGGGGGATATTAGGACCTCGCGTTGATGGAGCGGCCGATACCAGATTAGGTAGTTGGTGAGGTAAAGGCTCACCAAGCCTGCGCTCTGTAGTTGGTTTGAGAGGAGTGGCTCAGCCGACGGTGGGAATTGAGAGCTCGGTCCAGACTCCTACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2540#0 AGAGTTTGATCCTGGCTCAGAATCAACGCTGGCGGCGTGCCTCAGACATGCAAGTCGTAC 60 consensus_2540#1 --AGTTTGATCCTGGCTCAGATTGAGCGCTGGCGGCATGCCTTACACATGCAAGTCGAAC 58 ******************* * * ********** ***** * ************ ** consensus_2540#0 GTGAAAGTCCTTCGGGATGAGTA-AAGTGGCGCACGGGTGAGTAACACGTGAGTAATTTG 119 consensus_2540#1 GGTAACGCGGGGCAACCTGGCGATGAGTGGCGAACGGGTGAGTAATATATAG--AACGTG 116 * ** * * ** * ******* ************ * * ** ** consensus_2540#0 CCTTTGGGTGGGGAATACCAACCGGAAACGGTTG--TTAATACCGCATAACGCTTACGCT 177 consensus_2540#1 TCCATGAGTGGGGGATAGC--CCGGCGATAGCCGGATTAATACGGCATAAGAC------- 167 * ** ****** *** * **** * * * ******* ****** * consensus_2540#0 GTAATGGCGTAGGTTAAAGCGGGGGATCGCAAGACCTCGCGCCTGAAGAGAAGCTCGCGG 237 consensus_2540#1 ------GCGAGGGTGAAAGCGGGGGATATTAGGACCTCGCGTTGATGGAGCGGCCGATAC 221 *** *** ************ * ********* *** ** consensus_2540#0 CAGATTAGGTAGTTGGTGAGGTAATGGCTCACCAAGCCTGCGATCTGTAGCCGGCCTGAG 297 consensus_2540#1 CAGATTAGGTAGTTGGTGAGGTAAAGGCTCACCAAGCCTGCGCTCTGTAGTTGGTTTGAG 281 ************************ ***************** ******* ** **** consensus_2540#0 AGG-GCGG-TCGGCC-ACACTGACA-CTGACA-TACGGGTCAGACTCCTACGGGAGGCAG 352 consensus_2540#1 AGGAGTGGCTCAGCCGACGGTGGGAATTGAGAGCTCGGTCCAGACTCCTACG-------- 333 *** * ** ** *** ** ** * *** * *** ************ consensus_2540#0 CAGTCGGGAATTTTGGGCAATGGGCGCAAGCCTGACCCAGCAACGCCGCGTGAAGGATGA 412 consensus_2540#1 ------------------------------------------------------------ consensus_2540#0 AGCATTTCGGTGTGTAAACTTCGCAAGAATAGGAAGAATAAGTTTGAACGAATAGTTCAT 472 consensus_2540#1 ------------------------------------------------------------ consensus_2540#0 ACGATGACGGTACTATTTATAAGCTCCGGCTAACT 507 consensus_2540#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||