These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [TGAAACTCCTAAGGTATATGGAATTAAACGACCCCTGCTATTATGCAACTTAGACGTTTCACATTTTAATATTATTCGTGCTTATCCTTAAATGAATTTGTCAGCGTGTTTAAAACAATCAAATATATTTACAATCAAAAACGTATGTGATTTACCTGCAAATAAACGACCAAGAATACTAGCACAACCGATCGTTAAAAAAAGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTAAAGCGTTGATATATTTAACCGCTGATTGATCGAACTGATTAGATGTTCGATTATATTTAATCTCATCGGTCAA] [+] EMBL CD089923 [TGAAACTCCTAAGGTATATGGAATTAAACGACCCCTGCTATTATGCAACTTAGACGTTTCACATTTTAATATTATTCGTGCTTATCCTTAAATGAATTTGTCAGCGTGTTTAAAACAATCAAATATATTTACAATCAAAAACGTATGTGATTTACCTGCAAATAAACGACCAAGAATACTAGCACAACCGATCGTTAAAAAAAGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTAAAGCGTTGATATATTTAACCGCTGATTGATCGAACTGATTAGATGTTCGATTATATTTAATCTCATCGGTCAA] consensusID : consensus_2566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence [ATAGGATCTACCATTAGAGGAAACCGACATAAAAATTTTCGATTTGTATTCAAACCCCTTTCAATATACAATCCTGCAAATAAACGACCAAGAATACTAGCACAACCGATCGTTAAAAAAAGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTAAAGCGTTGATATATTTAACCGCTGATTGATCGAACTGATTAGATGTTCGATTATATTTAATCTCATCGGTCAA] [-] EMBL CD192387 [ATAGGATCTACCATTAGAGGAAACCGACATAAAAATTTTCGATTTGTATTCAAACCCCTTTCAATATACAATCCTGCAAATAAACGACCAAGAATACTAGCACAACCGATCGTTAAAAAAAGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTAAAGCGTTGATATATTTAACCGCTGATTGATCGAACTGATTAGATGTTCGATTATATTTAATCTCATCGGTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2566#0 TGAAACTCCTAAGGTATATGGAATTAAACGACCCCTGCTATTATGCAACTTAGACGTTTC 60 consensus_2566#1 ------------------------------------------------------------ consensus_2566#0 ACATTTTAATATTATTCGTGCTTATCCTTAAATGAATTTGTCAGCGTGTTTAAAACAATC 120 consensus_2566#1 --------------ATAGGATCTACCATTAGAGGAAACCGACA------TAAAAATTTTC 40 * * ** * *** * *** * ** * **** ** consensus_2566#0 AAAT-ATATTTACAATCAAAAACGTATGTGATTTACCTGCAAATAAACGACCAAGAATAC 179 consensus_2566#1 GATTTGTATTCAAACCCCTTTCAATATACAAT---CCTGCAAATAAACGACCAAGAATAC 97 * * **** * * * *** ** ************************* consensus_2566#0 TAGCACAACCGATCGTTAAAAAAAGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTA 239 consensus_2566#1 TAGCACAACCGATCGTTAAAAAAAGGGATTCTGAACTAGAAAATGCATAGTTTCTCTTTA 157 ************************************************************ consensus_2566#0 AAGCGTTGATATATTTAACCGCTGATTGATCGAACTGATTAGATGTTCGATTATATTTAA 299 consensus_2566#1 AAGCGTTGATATATTTAACCGCTGATTGATCGAACTGATTAGATGTTCGATTATATTTAA 217 ************************************************************ consensus_2566#0 TCTCATCGGTCAA 312 consensus_2566#1 TCTCATCGGTCAA 230 ************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||