These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [AAACGCTGATTGGATGAAATGCTTCTTAATGTTTCCTGAGCTTGTCATGTCTATTGCGAGAAATTTTCTAGATCACCCCAACACTATCTTATTGACAAAGGAGAAAAAGAAAGTGACGAACAAGAATATAATTAGCACTTAAGTATTATAAAAATTAGAAGGGGTGCTAAAACAGTGGAAGAATAATTTATTAGACATGACTGTTTTGTACAGAAATCTGGTTTAAAACAATAAACTGCTAGAGCTTAACCCGGACATAAATTCGAGTTATGCCTTATGGTCGGAGTTCGCTATGTGTTTGAGGATTGAACTGTTGATTGATTTGCATTCTCTTCGAGAGTAGTGCTCGGATATTCGTTCATCAAGTTCAGTGTTTGTACGGCCAATACAACCTGCTCCACGAAAGCAAGTAAACT] [+] EMBL CD148771 [AAACGCTGATTGGATGAAATGCTTCTTAATGTTTCCTGAGCTTGTCATGTCTATTGCGAGAAATTTTCTAGATCACCCCAACACTATCTTATTGACAAAGGAGAAAAAGAAAGTGACGAACAAGAATATAATTAGCACTTAAGTATTATAAAAATTAGAAGGGGTGCTAAAACAGTGGAAGAATAATTTATTAGACATGACTGTTTTGTACAGAAATCTGGTTTAAAACAATAAACTGCTAGAGCTTAACCCGGACATAAATTCGAGTTATGCCTTATGGTCGGAGTTCGCTATGTGTTTGAGGATTGAACTGTTGATTGATTTGCATTCTCTTCGAGAGTAGTGCTCGGATATTCGTTCATCAAGTTCAGTGTTTGTACGGCCAATACAACCTGCTCCACGAAAGCAAGTAAACT] consensusID : consensus_257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [GCTGCCATTGATTGATAATTCTTGACACTTGTCTCGAATAGGTCAATTGCTCTGTTTCCAATCTAGATGTTAGAAATTGTTAAAACAATAGTTAAAGTTTTATTGAATAAATTCGCCCATATTTATTTCGTTAAAAACTTAGTTTGATCTCATCTTGCATCAGATAAACAAACCTGTGAATTTATGAATGTTTTAAACACTGGTGATGTTTACATAGGTTTTGTGCTGTTTTGATCCTAGTCGTTTCAGTTCCTAACTATGTCATGACTTCTCCTTTTCAGTTTTCACCAAGTCCTTTTCACTAGTTTGATATTTGC] [+] EMBL CD131744 [GCTGCCATTGATTGATAATTCTTGACACTTGTCTCGAATAGGTCAATTGCTCTGTTTCCAATCTAGATGTTAGAAATTGTTAAAACAATAGTTAAAGTTTTATTGAATAAATTCGCCCATATTTATTTCGTTAAAAACTTAGTTTGATCTCATCTTGCATCAGATAAACAAACCTGTGAATTTATGAATGTTTTAAACACTGGTGATGTTTACATAGGTTTTGTGCTGTTTTGATCCTAGTCGTTTCAGTTCCTAACTATGTCATGACTTCTCCTTTTCAGTTTTCACCAAGTCCTTTTCACTAGTTTGATATTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_257#0 AAACGCTGATTGGATGAAATGCTTCTTAATGTTTCCTGAGCTTGTCATGTCTATTGCGAG 60 consensus_257#1 ----------------------------------GCTGCCATTGAT-TGATAATTCTTGA 25 *** *** ** *** consensus_257#0 AAATTTTCTAGATCACCCCAACACTATCTTATTGACAAAGGAGAAAAAGAAAGTGACGAA 120 consensus_257#1 CACTTGTCTCGAATAGGTCAAT--TGCTCTGTTTCCAATCTAGATGTTAGAAATTGT--- 80 * ** *** ** * *** * * ** *** *** ** * consensus_257#0 CAAGAATATAATTAGCACTTAAGTATTATAAAAATTAGAAGGGGTGCTAAAACAGTGGAA 180 consensus_257#1 TAAAACAATAGTTAAAGTTT---TATTGAATAAATTCGCCCATAT-TTATTTCGTTAAAA 136 ** * *** *** ** **** * ***** * * ** * * ** consensus_257#0 GAATAATTT-ATTAGACATGACTGTTTTGTACAGAAATCTGGTTTAAAACAATAAACTGC 239 consensus_257#1 ACTTAGTTTGATCTCATCTTGC-ATCAGATAAACAAACCTG---TGAATTTATGAATGTT 192 ** *** ** * * * * ** * *** *** * ** ** ** consensus_257#0 TAGAGCTTAACCCGGACATAAATTCGAGTTATGCC-TTATGGTCGGAGTTCGCTATGTGT 298 consensus_257#1 TTAAACACTGGTGATGTTTACATAGGTTTTGTGCTGTTTTGATCCTAGTC--------GT 244 * * * ** ** * ** *** ** ** ** *** ** consensus_257#0 TTGAGGATTGAACTGTTGATTGATTTGCATTCTCTTCGAGAGTAGTGCTCGGATATTCGT 358 consensus_257#1 TTCAGTTCCTAACTATGTCATGACTTC--TCCTTTTC---AGTTTTCACCAAGTCCTT-T 298 ** ** **** * *** ** * ** *** *** * * * * * consensus_257#0 TCATCAAGTTCAGTGTTTGTACGGCCAATACAACCTGCTCCACGAAAGCAAGTAAACT 416 consensus_257#1 TCACTA-GTTTGATATTTGC-------------------------------------- 317 *** * *** * **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||