These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [GGGAGTTGAATCCGACGAGTATTTTGTCGCCGATGCAAACACTTTACACCAGAAAGGGAAGTATTTGCCTCAAATCTGTCATGTTGTAAAACAGTACACCTGTGATTTATTGATTACTAGGCAGTGAGAACGGCCCAGATTATGAAGCTGAACAATAATGATTTAAATCTCCCAAAGCGCACCATTTCCCATAAGACTGCAGGTAAACCTTGCGTACCCACTAATGTGAAACCCACGCTCAAGGTATCCTGCCAACTTACCCTCATAATTATTACAAAATATCACAATCCTAGTTATTTGAAAGTTAACGAAAAATTATAACGAATAAACTTTTGAAAAGTTCCAAATATATCTAAGTGATAACATATTCATTTATTGAATAACAATAGATCCATAAACATCAGAAGGTAATAATGAGTTTTTAGACCCGGTTTCTCCAGAAATCATATGACTAATTACGTTTAAGCATGGATAAGACTTGATAATTCTGGACACAGNCGGAG] [+] EMBL CD066329 [GGGAGTTGAATCCGACGAGTATTTTGTCGCCGATGCAAACACTTTACACCAGAAAGGGAAGTATTTGCCTCAAATCTGTCATGTTGTAAAACAGTACACCTGTGATTTATTGATTACTAGGCAGTGAGAACGGCCCAGATTATGAAGCTGAACAATAATGATTTAAATCTCCCAAAGCGCACCATTTCCCATAAGACTGCAGGTAAACCTTGCGTACCCACTAATGTGAAACCCACGCTCAAGGTATCCTGCCAACTTACCCTCATAATTATTACAAAATATCACAATCCTAGTTATTTGAAAGTTAACGAAAAATTATAACGAATAAACTTTTGAAAAGTTCCAAATATATCTAAGTGATAACATATTCATTTATTGAATAACAATAGATCCATAAACATCAGAAGGTAATAATGAGTTTTTAGACCCGGTTTCTCCAGAAATCATATGACTAATTACGTTTAAGCATGGATAAGACTTGATAATTCTGGACACAGNCGGAG] consensusID : consensus_2571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence [TGATAAGTTCCAAATATATTTAAGTGATAACATATTCATTTATGAATTAGCAATAGATCCATAAACATCAGAAGGTAAATAATGAGTTTTAAGAACCGTTTTCTCCAGAAATCATATGACTAATAACGTTTAAGCATTGATAAGACTTGATAATTATGGACACAGTTGTAGATGCATAC] [-] EMBL CD066628 [TGATAAGTTCCAAATATATTTAAGTGATAACATATTCATTTATGAATTAGCAATAGATCCATAAACATCAGAAGGTAAATAATGAGTTTTAAGAACCGTTTTCTCCAGAAATCATATGACTAATAACGTTTAAGCATTGATAAGACTTGATAATTATGGACACAGTTGTAGATGCATAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2571#0 GGGAGTTGAATCCGACGAGTATTTTGTCGCCGATGCAAACACTTTACACCAGAAAGGGAA 60 consensus_2571#1 ------------------------------------------------------------ consensus_2571#0 GTATTTGCCTCAAATCTGTCATGTTGTAAAACAGTACACCTGTGATTTATTGATTACTAG 120 consensus_2571#1 ------------------------------------------------------------ consensus_2571#0 GCAGTGAGAACGGCCCAGATTATGAAGCTGAACAATAATGATTTAAATCTCCCAAAGCGC 180 consensus_2571#1 ------------------------------------------------------------ consensus_2571#0 ACCATTTCCCATAAGACTGCAGGTAAACCTTGCGTACCCACTAATGTGAAACCCACGCTC 240 consensus_2571#1 ------------------------------------------------------------ consensus_2571#0 AAGGTATCCTGCCAACTTACCCTCATAATTATTACAAAATATCACAATCCTAGTTATTTG 300 consensus_2571#1 ------------------------------------------------------------ consensus_2571#0 AAAGTTAACGAAAAATTATAACGAATAAACTTTTGAAAAGTTCCAAATATATCTAAGTGA 360 consensus_2571#1 ---------------------------------TGATAAGTTCCAAATATATTTAAGTGA 27 *** *************** ******* consensus_2571#0 TAACATATTCATTTATTGAATAACAATAGATCCATAAACATCAGAAGGTAA-TAATGAGT 419 consensus_2571#1 TAACATATTCATTTATGAATTAGCAATAGATCCATAAACATCAGAAGGTAAATAATGAGT 87 **************** * ** **************************** ******** consensus_2571#0 TTTTAGACCCGGTTTCTCCAGAAATCATATGACTAATTACGTTTAAGCATGGATAAGACT 479 consensus_2571#1 TTTAAGAACCGTTTTCTCCAGAAATCATATGACTAATAACGTTTAAGCATTGATAAGACT 147 *** *** *** ************************* ************ ********* consensus_2571#0 TGATAATTCTGGACACAGNCGGAG-------- 503 consensus_2571#1 TGATAATTATGGACACAGTTGTAGATGCATAC 179 ******** ********* * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||