cluster # 2571

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Schistosoma mansoni
cluster # 2571 cluster # 2571 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2571#0 length = 503 sequences # 1

consensus_2571#1 length = 179 sequences # 1

consensusID : consensus_2571#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [GGGAGTTGAATCCGACGAGTATTTTGTCGCCGATGCAAACACTTTACACCAGAAAGGGAAGTATTTGCCTCAAATCTGTCATGTTGTAAAACAGTACACCTGTGATTTATTGATTACTAGGCAGTGAGAACGGCCCAGATTATGAAGCTGAACAATAATGATTTAAATCTCCCAAAGCGCACCATTTCCCATAAGACTGCAGGTAAACCTTGCGTACCCACTAATGTGAAACCCACGCTCAAGGTATCCTGCCAACTTACCCTCATAATTATTACAAAATATCACAATCCTAGTTATTTGAAAGTTAACGAAAAATTATAACGAATAAACTTTTGAAAAGTTCCAAATATATCTAAGTGATAACATATTCATTTATTGAATAACAATAGATCCATAAACATCAGAAGGTAATAATGAGTTTTTAGACCCGGTTTCTCCAGAAATCATATGACTAATTACGTTTAAGCATGGATAAGACTTGATAATTCTGGACACAGNCGGAG]

[+] EMBL CD066329             [GGGAGTTGAATCCGACGAGTATTTTGTCGCCGATGCAAACACTTTACACCAGAAAGGGAAGTATTTGCCTCAAATCTGTCATGTTGTAAAACAGTACACCTGTGATTTATTGATTACTAGGCAGTGAGAACGGCCCAGATTATGAAGCTGAACAATAATGATTTAAATCTCCCAAAGCGCACCATTTCCCATAAGACTGCAGGTAAACCTTGCGTACCCACTAATGTGAAACCCACGCTCAAGGTATCCTGCCAACTTACCCTCATAATTATTACAAAATATCACAATCCTAGTTATTTGAAAGTTAACGAAAAATTATAACGAATAAACTTTTGAAAAGTTCCAAATATATCTAAGTGATAACATATTCATTTATTGAATAACAATAGATCCATAAACATCAGAAGGTAATAATGAGTTTTTAGACCCGGTTTCTCCAGAAATCATATGACTAATTACGTTTAAGCATGGATAAGACTTGATAATTCTGGACACAGNCGGAG]




>consensus_2571#0
GGGAGTTGAATCCGACGAGTATTTTGTCGCCGATGCAAACACTTTACACCAGAAAGGGAA
GTATTTGCCTCAAATCTGTCATGTTGTAAAACAGTACACCTGTGATTTATTGATTACTAG
GCAGTGAGAACGGCCCAGATTATGAAGCTGAACAATAATGATTTAAATCTCCCAAAGCGC
ACCATTTCCCATAAGACTGCAGGTAAACCTTGCGTACCCACTAATGTGAAACCCACGCTC
AAGGTATCCTGCCAACTTACCCTCATAATTATTACAAAATATCACAATCCTAGTTATTTG
AAAGTTAACGAAAAATTATAACGAATAAACTTTTGAAAAGTTCCAAATATATCTAAGTGA
TAACATATTCATTTATTGAATAACAATAGATCCATAAACATCAGAAGGTAATAATGAGTT
TTTAGACCCGGTTTCTCCAGAAATCATATGACTAATTACGTTTAAGCATGGATAAGACTT
GATAATTCTGGACACAGNCGGAG

consensusID : consensus_2571#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [TGATAAGTTCCAAATATATTTAAGTGATAACATATTCATTTATGAATTAGCAATAGATCCATAAACATCAGAAGGTAAATAATGAGTTTTAAGAACCGTTTTCTCCAGAAATCATATGACTAATAACGTTTAAGCATTGATAAGACTTGATAATTATGGACACAGTTGTAGATGCATAC]

[-] EMBL CD066628             [TGATAAGTTCCAAATATATTTAAGTGATAACATATTCATTTATGAATTAGCAATAGATCCATAAACATCAGAAGGTAAATAATGAGTTTTAAGAACCGTTTTCTCCAGAAATCATATGACTAATAACGTTTAAGCATTGATAAGACTTGATAATTATGGACACAGTTGTAGATGCATAC]




>consensus_2571#1
TGATAAGTTCCAAATATATTTAAGTGATAACATATTCATTTATGAATTAGCAATAGATCC
ATAAACATCAGAAGGTAAATAATGAGTTTTAAGAACCGTTTTCTCCAGAAATCATATGAC
TAATAACGTTTAAGCATTGATAAGACTTGATAATTATGGACACAGTTGTAGATGCATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2571#0      GGGAGTTGAATCCGACGAGTATTTTGTCGCCGATGCAAACACTTTACACCAGAAAGGGAA 60
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      GTATTTGCCTCAAATCTGTCATGTTGTAAAACAGTACACCTGTGATTTATTGATTACTAG 120
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      GCAGTGAGAACGGCCCAGATTATGAAGCTGAACAATAATGATTTAAATCTCCCAAAGCGC 180
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      ACCATTTCCCATAAGACTGCAGGTAAACCTTGCGTACCCACTAATGTGAAACCCACGCTC 240
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      AAGGTATCCTGCCAACTTACCCTCATAATTATTACAAAATATCACAATCCTAGTTATTTG 300
consensus_2571#1      ------------------------------------------------------------
                                                                                  

consensus_2571#0      AAAGTTAACGAAAAATTATAACGAATAAACTTTTGAAAAGTTCCAAATATATCTAAGTGA 360
consensus_2571#1      ---------------------------------TGATAAGTTCCAAATATATTTAAGTGA 27
                                                       *** *************** *******

consensus_2571#0      TAACATATTCATTTATTGAATAACAATAGATCCATAAACATCAGAAGGTAA-TAATGAGT 419
consensus_2571#1      TAACATATTCATTTATGAATTAGCAATAGATCCATAAACATCAGAAGGTAAATAATGAGT 87
                      ****************  * ** **************************** ********

consensus_2571#0      TTTTAGACCCGGTTTCTCCAGAAATCATATGACTAATTACGTTTAAGCATGGATAAGACT 479
consensus_2571#1      TTTAAGAACCGTTTTCTCCAGAAATCATATGACTAATAACGTTTAAGCATTGATAAGACT 147
                      *** *** *** ************************* ************ *********

consensus_2571#0      TGATAATTCTGGACACAGNCGGAG-------- 503
consensus_2571#1      TGATAATTATGGACACAGTTGTAGATGCATAC 179
                      ******** *********  * **