cluster # 2572

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Schistosoma mansoni
cluster # 2572 cluster # 2572 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2572#0 length = 576 sequences # 1

consensus_2572#1 length = 454 sequences # 1

consensusID : consensus_2572#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [AGGACTGAAGGACAGATGTATTGTTTATCAATGTCCTGTGCACTATTAATTCGGTGTGTCAATCACAGCTTAGGTAATTTATTCGTAGTCTTTTTACATGCATGACAGGTCACGTGGTTCTATAAATGAATTTGGTGTGTCAGGGCCTAAATCCCATGAATCACCTTTTTTAAATCTTGGAATACGAGAATCAGTTCAGACTATCAAAACAAAAGAATTTTATAGTCCCAAGATAGATTCAATAGATAAACACATACTTGATTGACTAAGCTTCCACGTAAATGTAACGGTACATGATCACTTCGCGTTGAACCAGACGGTGCAAGTGATGGTTTCGGATTAATATCAGCATCTGGAGAATATAGATAGCCTTGTTTTAGATCAGTAGAATGATAAGTGGTAGTACGTCGAGATCCTGTTAAGTCATCACTATTTGAATAAAAGTGCATTGGTTTTGTAAAATCATTGATACCACCAGAATGGACTCGATTAGTTTCAGTATTATTACTTCCAGATAATTCATTTAAATAATCATCGAATGAATTTGTTATTATAGACGAATTACTTTGATTTAAT]

[+] EMBL CD090001             [AGGACTGAAGGACAGATGTATTGTTTATCAATGTCCTGTGCACTATTAATTCGGTGTGTCAATCACAGCTTAGGTAATTTATTCGTAGTCTTTTTACATGCATGACAGGTCACGTGGTTCTATAAATGAATTTGGTGTGTCAGGGCCTAAATCCCATGAATCACCTTTTTTAAATCTTGGAATACGAGAATCAGTTCAGACTATCAAAACAAAAGAATTTTATAGTCCCAAGATAGATTCAATAGATAAACACATACTTGATTGACTAAGCTTCCACGTAAATGTAACGGTACATGATCACTTCGCGTTGAACCAGACGGTGCAAGTGATGGTTTCGGATTAATATCAGCATCTGGAGAATATAGATAGCCTTGTTTTAGATCAGTAGAATGATAAGTGGTAGTACGTCGAGATCCTGTTAAGTCATCACTATTTGAATAAAAGTGCATTGGTTTTGTAAAATCATTGATACCACCAGAATGGACTCGATTAGTTTCAGTATTATTACTTCCAGATAATTCATTTAAATAATCATCGAATGAATTTGTTATTATAGACGAATTACTTTGATTTAAT]




>consensus_2572#0
AGGACTGAAGGACAGATGTATTGTTTATCAATGTCCTGTGCACTATTAATTCGGTGTGTC
AATCACAGCTTAGGTAATTTATTCGTAGTCTTTTTACATGCATGACAGGTCACGTGGTTC
TATAAATGAATTTGGTGTGTCAGGGCCTAAATCCCATGAATCACCTTTTTTAAATCTTGG
AATACGAGAATCAGTTCAGACTATCAAAACAAAAGAATTTTATAGTCCCAAGATAGATTC
AATAGATAAACACATACTTGATTGACTAAGCTTCCACGTAAATGTAACGGTACATGATCA
CTTCGCGTTGAACCAGACGGTGCAAGTGATGGTTTCGGATTAATATCAGCATCTGGAGAA
TATAGATAGCCTTGTTTTAGATCAGTAGAATGATAAGTGGTAGTACGTCGAGATCCTGTT
AAGTCATCACTATTTGAATAAAAGTGCATTGGTTTTGTAAAATCATTGATACCACCAGAA
TGGACTCGATTAGTTTCAGTATTATTACTTCCAGATAATTCATTTAAATAATCATCGAAT
GAATTTGTTATTATAGACGAATTACTTTGATTTAAT

consensusID : consensus_2572#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [ATAAAATAATGAAGAAGAAGAAGAATTAGGAATAGATTTTCCAATACTAGATATTGATGTTTCATTTGAATTACTACGATTATTATCTGATAGAATATCTGATGAACGTGGACTATTGGGTTGATTGACTAAGCTTCCACGTAAATGTATCGGTACATGATCACTTCGCGTTGAACCAGACGGTGCAAGTGATGGTTTCGGATTAATATCAGCATCTGGAGAATATAGATAGCCTTGTTTTAGATCAGTAGAATGGTAAGTGGTAGTACGTCGAGATCCTGTTAAGTCATCACTATTTGAATAAAAGTGCATTGGTTTTGTAAAATCATTGATACCACCAGAATGGACTCGATTAGTTTCAGTATTATTACTTCCAGATAATTCATTTAAATAATCATCGAATGAATTTGTTATTATAGACGAATTACTTTGATTTAATTGTGAATTACAATCA]

[-] EMBL CD194570             [ATAAAATAATGAAGAAGAAGAAGAATTAGGAATAGATTTTCCAATACTAGATATTGATGTTTCATTTGAATTACTACGATTATTATCTGATAGAATATCTGATGAACGTGGACTATTGGGTTGATTGACTAAGCTTCCACGTAAATGTATCGGTACATGATCACTTCGCGTTGAACCAGACGGTGCAAGTGATGGTTTCGGATTAATATCAGCATCTGGAGAATATAGATAGCCTTGTTTTAGATCAGTAGAATGGTAAGTGGTAGTACGTCGAGATCCTGTTAAGTCATCACTATTTGAATAAAAGTGCATTGGTTTTGTAAAATCATTGATACCACCAGAATGGACTCGATTAGTTTCAGTATTATTACTTCCAGATAATTCATTTAAATAATCATCGAATGAATTTGTTATTATAGACGAATTACTTTGATTTAATTGTGAATTACAATCA]




>consensus_2572#1
ATAAAATAATGAAGAAGAAGAAGAATTAGGAATAGATTTTCCAATACTAGATATTGATGT
TTCATTTGAATTACTACGATTATTATCTGATAGAATATCTGATGAACGTGGACTATTGGG
TTGATTGACTAAGCTTCCACGTAAATGTATCGGTACATGATCACTTCGCGTTGAACCAGA
CGGTGCAAGTGATGGTTTCGGATTAATATCAGCATCTGGAGAATATAGATAGCCTTGTTT
TAGATCAGTAGAATGGTAAGTGGTAGTACGTCGAGATCCTGTTAAGTCATCACTATTTGA
ATAAAAGTGCATTGGTTTTGTAAAATCATTGATACCACCAGAATGGACTCGATTAGTTTC
AGTATTATTACTTCCAGATAATTCATTTAAATAATCATCGAATGAATTTGTTATTATAGA
CGAATTACTTTGATTTAATTGTGAATTACAATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2572#0      AGGACTGAAGGACAGATGTATTGTTTATCAATGTCCTGTGCACTATTAATTCGGTGTGTC 60
consensus_2572#1      ------------------------------------------------------------
                                                                                  

consensus_2572#0      AATCACAGCTTAGGTAATTTATTCGTAGTCTTTTTACATGCATGACAGGTCACGTGGTTC 120
consensus_2572#1      ------------------------------------------------------------
                                                                                  

consensus_2572#0      TATAAATGAATTTGGTGTGTCAGGGCCTAAATCCCATGAATCACCTTTTTTAAATCTTGG 180
consensus_2572#1      -----ATAAAAT-AATGAAGAAGAAGAAGAATT--AGGAATAGA--TTTTCCAATACTAG 50
                           ** ** *   **    **      ***   * ****     ****  ***  * *

consensus_2572#0      AATACGAGAATCAGTTCAGACTATCAAAACAAAAGAATTTTATAGTCCCAAGATAGATTC 240
consensus_2572#1      ATATTGATGTTTCATTTGAATTACTACGATTATT--ATCTGATAG----AATATCTGATG 104
                      *    **   *   **   * **  *  *  *    ** * ****    ** **    * 

consensus_2572#0      AATAGATAAACACATACTTGATTGACTAAGCTTCCACGTAAATGTAACGGTACATGATCA 300
consensus_2572#1      AAC-GTGGACTATTGGGTTGATTGACTAAGCTTCCACGTAAATGTATCGGTACATGATCA 163
                      **  *   *  *     ***************************** *************

consensus_2572#0      CTTCGCGTTGAACCAGACGGTGCAAGTGATGGTTTCGGATTAATATCAGCATCTGGAGAA 360
consensus_2572#1      CTTCGCGTTGAACCAGACGGTGCAAGTGATGGTTTCGGATTAATATCAGCATCTGGAGAA 223
                      ************************************************************

consensus_2572#0      TATAGATAGCCTTGTTTTAGATCAGTAGAATGATAAGTGGTAGTACGTCGAGATCCTGTT 420
consensus_2572#1      TATAGATAGCCTTGTTTTAGATCAGTAGAATGGTAAGTGGTAGTACGTCGAGATCCTGTT 283
                      ******************************** ***************************

consensus_2572#0      AAGTCATCACTATTTGAATAAAAGTGCATTGGTTTTGTAAAATCATTGATACCACCAGAA 480
consensus_2572#1      AAGTCATCACTATTTGAATAAAAGTGCATTGGTTTTGTAAAATCATTGATACCACCAGAA 343
                      ************************************************************

consensus_2572#0      TGGACTCGATTAGTTTCAGTATTATTACTTCCAGATAATTCATTTAAATAATCATCGAAT 540
consensus_2572#1      TGGACTCGATTAGTTTCAGTATTATTACTTCCAGATAATTCATTTAAATAATCATCGAAT 403
                      ************************************************************

consensus_2572#0      GAATTTGTTATTATAGACGAATTACTTTGATTTAAT--------------- 576
consensus_2572#1      GAATTTGTTATTATAGACGAATTACTTTGATTTAATTGTGAATTACAATCA 454
                      ************************************