cluster # 2577

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Schistosoma mansoni
cluster # 2577 cluster # 2577 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2577#0 length = 466 sequences # 1

consensus_2577#1 length = 277 sequences # 1

consensusID : consensus_2577#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [TTTTGAAAAAGGGTATCAGGAGTAACGTCTACGCATAACATCGGCTAATAAATCCCGACTGTTCGTCCGATCTTATTCGTAACTCAATGTTTCGAATCAGTGAACGTGTTCATTATTGATTGAAAACCTTTGAAGATACACTAATTTATTTTACCGTAAATGTTGAAAAATACATTGCTTCATCCTTGTTCTGTATACATTCATGTCTTCAATCCTGTCCAATTTTAATGTTCTACTTTCGTCGATTATCTACTGCTGATGCTTTTTTTATAGCTCCTTTCTTCTGTTCACTTAGTAGTGTTTAAAGTTAGTTATTACTGCATTTTAATTAAAAGGTAGTGTGTCAGTTGAAGTAACTAAAGCACTTCCACAGTTCATTAATATAAATTGTTGATAGTTTGTATTGTACCTAAATTTCTGTAGAAAAATGAAAATAAACTGTCCCATAATAACCTCTCAACATTGG]

[+] EMBL CD066344             [TTTTGAAAAAGGGTATCAGGAGTAACGTCTACGCATAACATCGGCTAATAAATCCCGACTGTTCGTCCGATCTTATTCGTAACTCAATGTTTCGAATCAGTGAACGTGTTCATTATTGATTGAAAACCTTTGAAGATACACTAATTTATTTTACCGTAAATGTTGAAAAATACATTGCTTCATCCTTGTTCTGTATACATTCATGTCTTCAATCCTGTCCAATTTTAATGTTCTACTTTCGTCGATTATCTACTGCTGATGCTTTTTTTATAGCTCCTTTCTTCTGTTCACTTAGTAGTGTTTAAAGTTAGTTATTACTGCATTTTAATTAAAAGGTAGTGTGTCAGTTGAAGTAACTAAAGCACTTCCACAGTTCATTAATATAAATTGTTGATAGTTTGTATTGTACCTAAATTTCTGTAGAAAAATGAAAATAAACTGTCCCATAATAACCTCTCAACATTGG]




>consensus_2577#0
TTTTGAAAAAGGGTATCAGGAGTAACGTCTACGCATAACATCGGCTAATAAATCCCGACT
GTTCGTCCGATCTTATTCGTAACTCAATGTTTCGAATCAGTGAACGTGTTCATTATTGAT
TGAAAACCTTTGAAGATACACTAATTTATTTTACCGTAAATGTTGAAAAATACATTGCTT
CATCCTTGTTCTGTATACATTCATGTCTTCAATCCTGTCCAATTTTAATGTTCTACTTTC
GTCGATTATCTACTGCTGATGCTTTTTTTATAGCTCCTTTCTTCTGTTCACTTAGTAGTG
TTTAAAGTTAGTTATTACTGCATTTTAATTAAAAGGTAGTGTGTCAGTTGAAGTAACTAA
AGCACTTCCACAGTTCATTAATATAAATTGTTGATAGTTTGTATTGTACCTAAATTTCTG
TAGAAAAATGAAAATAAACTGTCCCATAATAACCTCTCAACATTGG

consensusID : consensus_2577#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [ATGTGAAGAACTAGACACTCCGTCAGATATGTTTTCATCCAATGTTGAGAGGCTATTATGGGACAGTTTATTTTCATTTTTACTATCAGATGATATCTGGGTGACTTTTGTGGACTGAAACTTATTTTTATCATCCTCTGTGTGAAAGGAGGCACGACTGGTCAATTTATTTACAAATCTTTTCAAAAATCCGCTGTTTCTTTGAGAGTTTTCAAATTCTGGGAGACCAAACGACACATACCCACCAGACTCGCTTATTGACTTCATCAGAAGTAAC]

[+] EMBL CD189148             [ATGTGAAGAACTAGACACTCCGTCAGATATGTTTTCATCCAATGTTGAGAGGCTATTATGGGACAGTTTATTTTCATTTTTACTATCAGATGATATCTGGGTGACTTTTGTGGACTGAAACTTATTTTTATCATCCTCTGTGTGAAAGGAGGCACGACTGGTCAATTTATTTACAAATCTTTTCAAAAATCCGCTGTTTCTTTGAGAGTTTTCAAATTCTGGGAGACCAAACGACACATACCCACCAGACTCGCTTATTGACTTCATCAGAAGTAAC]




>consensus_2577#1
ATGTGAAGAACTAGACACTCCGTCAGATATGTTTTCATCCAATGTTGAGAGGCTATTATG
GGACAGTTTATTTTCATTTTTACTATCAGATGATATCTGGGTGACTTTTGTGGACTGAAA
CTTATTTTTATCATCCTCTGTGTGAAAGGAGGCACGACTGGTCAATTTATTTACAAATCT
TTTCAAAAATCCGCTGTTTCTTTGAGAGTTTTCAAATTCTGGGAGACCAAACGACACATA
CCCACCAGACTCGCTTATTGACTTCATCAGAAGTAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2577#0      TTTTGAAAAAGGGTATCAGGAGTAACGTCTACGCATAACATCGGCTAATAAATCCCGACT 60
consensus_2577#1      ------------------------------------------------------------
                                                                                  

consensus_2577#0      GTTCGTCCGATCTTATTCGTAACTCAATGTTTCGAATCAGTGAACGTGTTCATTATTGAT 120
consensus_2577#1      ------------ATGTGAAGAACTAGACACTCCG--TCAG-ATATGTTTTCATCCAATGT 45
                                   * *    ****  *   * **  ****   * ** *****      *

consensus_2577#0      TGAAAACCTTTGAAGATACACTAATTTATTTTACCGTAAATGTTGAAAAATACATTGCTT 180
consensus_2577#1      TGAGAGGCTATTATGGGACAGT--TTATTTTCATTTTTACTATCAGATGATATCTGGGTG 103
                      *** *  ** * * *  *** *  **  *** *   * * * *   *  ***  * * * 

consensus_2577#0      CATCCTTGTTCTGTATACATTCATGTCTTCAATCCTGTCCAATTTTAATGTTCTACTTTC 240
consensus_2577#1      ----------------ACTTTTGTGGACTGAAACTTATTT--TTATCATCCTCTGTGTGA 145
                                      ** **  **   * ** * * *    ** * **  ***   *  

consensus_2577#0      GTCGATTATCTACTGCTGATGCTTTTTTTATAGCTCCTTTCTTCTGTTCACTTAGTAGTG 300
consensus_2577#1      AAGGAGGCACGACTG--GTCAATTTATTTACAAATCTTTTCAAAAATCCGCT--GTTTCT 201
                         **    * ****  *    *** **** *  ** ****     * * **  **    

consensus_2577#0      TTTAAAGTTAGTTATTACTGCATTTTAATTAAAAGGTAGTGTGTCAGTTGAAGTAACTAA 360
consensus_2577#1      TTGAGAGTTTTCAAATTCTGGGA---GACCAAACGACA-CATACCCACCAGACTCGCTTA 257
                      ** * ****    * * ***       *  *** *  *   *  *      * *  ** *

consensus_2577#0      AGCACTTCCACAGTTCATTAATATAAATTGTTGATAGTTTGTATTGTACCTAAATTTCTG 420
consensus_2577#1      TTGACTTCATCAGA--AGTAAC-------------------------------------- 277
                         *****  ***   * ***                                       

consensus_2577#0      TAGAAAAATGAAAATAAACTGTCCCATAATAACCTCTCAACATTGG 466
consensus_2577#1      ----------------------------------------------