These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [TTTCGAGCAAAGGBTATAAATTGTGAAAATAAGTTGAATAAGCCGTCTTCATTCTCTTTCATTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTGGAAATTCTAAGTTTGAGTGTACAGGACATAGAGAAGGGGATGTATTATTTTTCACTGACAATTAGAATTTAAGCATTCCCTCCTTTTTTTTAAAAAAAACTTGGAACCCTTTTTATAGATTTATTTTGTTAATAAAATTTACTGGCCTTGGAGATTTATTCTTTAAATGTTAA] [+] EMBL AI739686 [TTTCGAGCAAAGGBTATAAATTGTGAAAATAAGTTGAATAAGCCGTCTTCATTCTCTTTCATTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTGGAAATTCTAAGTTTGAGTGTACAGGACATAGAGAAGGGGATGTATTATTTTTCACTGACAATTAGAATTTAAGCATTCCCTCCTTTTTTTTAAAAAAAACTTGGAACCCTTTTTATAGATTTATTTTGTTAATAAAATTTACTGGCCTTGGAGATTTATTCTTTAAATGTTAA] consensusID : consensus_258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [TTTCGGCAGCACGCTTTAAATTGTGAAAATAAGTTGAATAAGCGTTCTTCCTACTGCTTTCTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTGAATTCTAAGTTTGAGTGTACAGGACATAGAAGAAGGGGAATGTATTAATTTTCACCTGACATTAGATTTAAGCATTCCCTCCATTTTTTTGATATAAACTTGGGCACCTTTTATAGATTAATTTTGGTCAGTAAAAATGCGTGGCCCTTGAGAGGT] [+] EMBL AI739684 [TTTCGGCAGCACGCTTTAAATTGTGAAAATAAGTTGAATAAGCGTTCTTCCTACTGCTTTCTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTGAATTCTAAGTTTGAGTGTACAGGACATAGAAGAAGGGGAATGTATTAATTTTCACCTGACATTAGATTTAAGCATTCCCTCCATTTTTTTGATATAAACTTGGGCACCTTTTATAGATTAATTTTGGTCAGTAAAAATGCGTGGCCCTTGAGAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_258#0 TTTCGAGCAAAGGBTATAAATTGTGAAAATAAGTTGAATAAGCCGTCTTCATTCTCTTTC 60 consensus_258#1 TTTCGGCAGCACGCTTTAAATTGTGAAAATAAGTTGAATAAGCGTTCTTCCTACTGCTTT 60 ***** * * * *************************** ***** * ** ** consensus_258#0 ATTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTGGAAAT 120 consensus_258#1 -CTTTTCTACTACGATTACCCTCACTGATATGATTGAATAAATTAAGCAAAACTG--AAT 117 ***************************************************** *** consensus_258#0 TCTAAGTTTGAGTGTACAGGACATAGAGAAGGGG--ATGTATTATTTTTCACTGACAATT 178 consensus_258#1 TCTAAGTTTGAGTGTACAGGACATAGAAGAAGGGGAATGTATTAATTTTCACCTGACATT 177 *************************** * *** ******** ******* *** consensus_258#0 AGAATTTAAGCATTCCCTCCTTTTTTTTAAAAAAAACTTGGAACCCTTTTTATAGATTTA 238 consensus_258#1 AGA-TTTAAGCATTCCCTCCATTTTTTTGATATAAACTTGGG-CACCTTTTATAGATTAA 235 *** **************** ******* * * ******** * * *********** * consensus_258#0 TTTTG-TTAATAAAATTTACTGGCCTTGGAGATTTATTCTTTAAATGTTAA 288 consensus_258#1 TTTTGGTCAGTAAAAATGCGTGGCCCTTGAGAGGT---------------- 270 ***** * * ***** * ***** * **** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||