cluster # 2583

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Schistosoma mansoni
cluster # 2583 cluster # 2583 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2583#0 length = 441 sequences # 1

consensus_2583#1 length = 373 sequences # 1

consensusID : consensus_2583#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTGGCAAATTCAGATCATTTTTATTGTGAATTTCTATGTACAGCACAAAAATTATTGGATTTGGTTTTATGTATAGTCATAATATAAAAGAGCGTTTTGTACATTCTCACTGACGGTTTTTTTTCCAGTTTTATTGTCCAAAGTTCGCCATACGAGATAAGATGTATTGTTCGAAAGTTTCAAAGTTAGACTTATTACTTGGAGTTGGTTCATATATGAATTTATCTTTTTCCACTTGTTTATCTTTGACGTTATTTGAATCAGTAATCCCATCTGTGATATTTTTTGATAACCATGATAAATGATGGGGTAAACTTGGTAGACCGACTTTCCCATGTTCAGATGCTTTTAATGCTTTTTTTGCTTCAACATAGGTGGAAAACTCAGCAATGGTACTGCCACGCTTACCAATAACGAATGC]

[+] EMBL AI395791             [TTTTTTTTTTTTTTTTTTTTTTGGCAAATTCAGATCATTTTTATTGTGAATTTCTATGTACAGCACAAAAATTATTGGATTTGGTTTTATGTATAGTCATAATATAAAAGAGCGTTTTGTACATTCTCACTGACGGTTTTTTTTCCAGTTTTATTGTCCAAAGTTCGCCATACGAGATAAGATGTATTGTTCGAAAGTTTCAAAGTTAGACTTATTACTTGGAGTTGGTTCATATATGAATTTATCTTTTTCCACTTGTTTATCTTTGACGTTATTTGAATCAGTAATCCCATCTGTGATATTTTTTGATAACCATGATAAATGATGGGGTAAACTTGGTAGACCGACTTTCCCATGTTCAGATGCTTTTAATGCTTTTTTTGCTTCAACATAGGTGGAAAACTCAGCAATGGTACTGCCACGCTTACCAATAACGAATGC]




>consensus_2583#0
TTTTTTTTTTTTTTTTTTTTTTGGCAAATTCAGATCATTTTTATTGTGAATTTCTATGTA
CAGCACAAAAATTATTGGATTTGGTTTTATGTATAGTCATAATATAAAAGAGCGTTTTGT
ACATTCTCACTGACGGTTTTTTTTCCAGTTTTATTGTCCAAAGTTCGCCATACGAGATAA
GATGTATTGTTCGAAAGTTTCAAAGTTAGACTTATTACTTGGAGTTGGTTCATATATGAA
TTTATCTTTTTCCACTTGTTTATCTTTGACGTTATTTGAATCAGTAATCCCATCTGTGAT
ATTTTTTGATAACCATGATAAATGATGGGGTAAACTTGGTAGACCGACTTTCCCATGTTC
AGATGCTTTTAATGCTTTTTTTGCTTCAACATAGGTGGAAAACTCAGCAATGGTACTGCC
ACGCTTACCAATAACGAATGC

consensusID : consensus_2583#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [TATTAAGTGTATAACAGGGTAATCGAAACACTTAGTCACAACACAACAATTCCATCTTCTAGCGTAATAACAAACATGGATAAAATTCTTTAAAACTCAACTTACTGCTTCATCATAGGTGGAAAACTCAGCAATGGCACTGCCACGCTTACCAATAACGAAAGCTATCACGTCACCGAACTACAAATAACAATTAAACGTATTCAAGAAAATAATTTAATAAAGGGTATTTCATCTGTCTCTTAAACGTAATAACAAACATGGATAAAATTCTTTAAAACTCAACTTACTGCTTCATCATAGGTGGAAAACTCAGCAATGGCACTGCCACGCTTACCAATAACGAAAGCTATCACGTCACCGAACTACAAAT]

[+] EMBL CD090091             [TATTAAGTGTATAACAGGGTAATCGAAACACTTAGTCACAACACAACAATTCCATCTTCTAGCGTAATAACAAACATGGATAAAATTCTTTAAAACTCAACTTACTGCTTCATCATAGGTGGAAAACTCAGCAATGGCACTGCCACGCTTACCAATAACGAAAGCTATCACGTCACCGAACTACAAATAACAATTAAACGTATTCAAGAAAATAATTTAATAAAGGGTATTTCATCTGTCTCTTAAACGTAATAACAAACATGGATAAAATTCTTTAAAACTCAACTTACTGCTTCATCATAGGTGGAAAACTCAGCAATGGCACTGCCACGCTTACCAATAACGAAAGCTATCACGTCACCGAACTACAAAT]




>consensus_2583#1
TATTAAGTGTATAACAGGGTAATCGAAACACTTAGTCACAACACAACAATTCCATCTTCT
AGCGTAATAACAAACATGGATAAAATTCTTTAAAACTCAACTTACTGCTTCATCATAGGT
GGAAAACTCAGCAATGGCACTGCCACGCTTACCAATAACGAAAGCTATCACGTCACCGAA
CTACAAATAACAATTAAACGTATTCAAGAAAATAATTTAATAAAGGGTATTTCATCTGTC
TCTTAAACGTAATAACAAACATGGATAAAATTCTTTAAAACTCAACTTACTGCTTCATCA
TAGGTGGAAAACTCAGCAATGGCACTGCCACGCTTACCAATAACGAAAGCTATCACGTCA
CCGAACTACAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2583#0      TTTTTTTTTTTTTTTTTTTTTTGGCAAATTCAGATCATTTTTATTGTGAATTTCTATGTA 60
consensus_2583#1      -------------------------------------------------TATTAAGTGTA 11
                                                                         **   ****

consensus_2583#0      CAGCACAAAAATTATTGGATTTGGTTTTATGTATAGTCATAATATAAAAGAGCGTTTTGT 120
consensus_2583#1      TAACAGGGTAATCGAAACACTTAGTCACA-ACACAACAATTCCATCTTCTAGCGTAATA- 69
                       * **    ***      * ** **   *   * *   **   **     *****  *  

consensus_2583#0      ACATTCTCACTGACGGTTTTTTTTCCAGTTTTATTGTCCAAAGTTCGCCATACGAGATAA 180
consensus_2583#1      --ACAAACATGGATAAAATTCTTTAAAACTCAACTTACTGC--TTCATCATAGGTGGAAA 125
                        *    **  **     ** ***  *  *  * *  *     ***  **** * *  **

consensus_2583#0      GATGTATTGTTCGAAAGTTTCAAAGTTAGACTTATTACTTGGAGTTGGTTCATATATGAA 240
consensus_2583#1      A--------CTCAGCAATGGCACTGCCACGCTTACCAATAACGAAAG------CTATCAC 171
                                **   * *  **  *  *  ****  * *       *       *** * 

consensus_2583#0      TTTATCTTTTTCCACTTGTTTATCTTTGACGTTATTTGAATCAGTAATCCCATCTGTGAT 300
consensus_2583#1      GTCACCGAACTACAAATAACAA--TTAAACGT-ATTCAAGAAAATAATTTAATAAAGGGT 228
                       * * *    * **  *    *  **  **** ***  *   * ****   **    * *

consensus_2583#0      ATTTTTTGATAACCATGATAAATGATGGGGTAAACTTGGTAGACCGACTTTCCCATGTTC 360
consensus_2583#1      ATTTC---ATCTGTCTCTTAAACGTAATAACAAACATGGATAA--AATTCTTTAAAACTC 283
                      ****    **     *  **** *       **** ***   *   * * *   *   **

consensus_2583#0      AGATGCTTTTAATGCTTTTTTTGCTTCAACATAGGTGGAAAACTCAGCAATGGTACTGCC 420
consensus_2583#1      AA--------------CTTACTGCTTCATCATAGGTGGAAAACTCAGCAATGGCACTGCC 329
                      *                **  ******* ************************ ******

consensus_2583#0      ACGCTTACCAATAACGAATGC----------------------- 441
consensus_2583#1      ACGCTTACCAATAACGAAAGCTATCACGTCACCGAACTACAAAT 373
                      ****************** **