cluster # 2588

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Schistosoma mansoni
cluster # 2588 cluster # 2588 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2588#0 length = 341 sequences # 1

consensus_2588#1 length = 238 sequences # 1

consensusID : consensus_2588#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 341
fasta sequence

                              [CAAGTGATCTTTCTATAGAGAAGTTTGTTCTTCCAGATGGTTCATGTCTAGACTACCAGTTGATGTAGTTTTCACGTGTTTGACAGTCATTCCAGCCATTTGAGCACTAGCAGGATTCGTCCCATGTGCTGAGGTAGGGATTAAACAAATTGTACGTTTGTGTTCACCTTTCCTATCCAAATATCCTTTGATAGCTTTTAGTCCAGCGTACTCACCCTGTGCTCCACTATTCGGTGCAAGACAAACATAATCATAGCCAGTTATCTCTTTGATGTCATTTTCCAGTTGTGCAATCAATTCCAAATAACCAGTAACTTGTTTTTTCGGTACAAAAGGATGCA]

[+] EMBL CD197795             [CAAGTGATCTTTCTATAGAGAAGTTTGTTCTTCCAGATGGTTCATGTCTAGACTACCAGTTGATGTAGTTTTCACGTGTTTGACAGTCATTCCAGCCATTTGAGCACTAGCAGGATTCGTCCCATGTGCTGAGGTAGGGATTAAACAAATTGTACGTTTGTGTTCACCTTTCCTATCCAAATATCCTTTGATAGCTTTTAGTCCAGCGTACTCACCCTGTGCTCCACTATTCGGTGCAAGACAAACATAATCATAGCCAGTTATCTCTTTGATGTCATTTTCCAGTTGTGCAATCAATTCCAAATAACCAGTAACTTGTTTTTTCGGTACAAAAGGATGCA]




>consensus_2588#0
CAAGTGATCTTTCTATAGAGAAGTTTGTTCTTCCAGATGGTTCATGTCTAGACTACCAGT
TGATGTAGTTTTCACGTGTTTGACAGTCATTCCAGCCATTTGAGCACTAGCAGGATTCGT
CCCATGTGCTGAGGTAGGGATTAAACAAATTGTACGTTTGTGTTCACCTTTCCTATCCAA
ATATCCTTTGATAGCTTTTAGTCCAGCGTACTCACCCTGTGCTCCACTATTCGGTGCAAG
ACAAACATAATCATAGCCAGTTATCTCTTTGATGTCATTTTCCAGTTGTGCAATCAATTC
CAAATAACCAGTAACTTGTTTTTTCGGTACAAAAGGATGCA

consensusID : consensus_2588#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 238
fasta sequence

                              [TTTCGAATTGATTACTGGATAATAAGTAATCCGATTAAAAGGTTTGTTCAGCCTCCTTTACGAAAAATGTTTATAATACTTGTAGCCAACTCAGCTCAAAATGAACATAAGAACCATAACCACTCACTGTACGTTTGTGTTCACCTTTCCTATCCAAATATCCTTTGATAGCTTTTAGTCCAGCGTACTCACCCTGTGCTCCACTATTCGGTGCAAGACAAACATAATCATAGCCAGT]

[-] EMBL CD090213             [TTTCGAATTGATTACTGGATAATAAGTAATCCGATTAAAAGGTTTGTTCAGCCTCCTTTACGAAAAATGTTTATAATACTTGTAGCCAACTCAGCTCAAAATGAACATAAGAACCATAACCACTCACTGTACGTTTGTGTTCACCTTTCCTATCCAAATATCCTTTGATAGCTTTTAGTCCAGCGTACTCACCCTGTGCTCCACTATTCGGTGCAAGACAAACATAATCATAGCCAGT]




>consensus_2588#1
TTTCGAATTGATTACTGGATAATAAGTAATCCGATTAAAAGGTTTGTTCAGCCTCCTTTA
CGAAAAATGTTTATAATACTTGTAGCCAACTCAGCTCAAAATGAACATAAGAACCATAAC
CACTCACTGTACGTTTGTGTTCACCTTTCCTATCCAAATATCCTTTGATAGCTTTTAGTC
CAGCGTACTCACCCTGTGCTCCACTATTCGGTGCAAGACAAACATAATCATAGCCAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2588#0      CAAGTGATCTTTCTATAGAGAAGTTTGTTCTTCCAGATGGTTCATGTCTAGACTACCAG- 59
consensus_2588#1      ---------------TTTCGAA--TTGAT-TACTGGATAATAAGTAATCCGATTAAAAGG 42
                                     *   ***  *** * * *  ***  *   *     ** **  ** 

consensus_2588#0      TTGATGTAGTTTTCACGTGTTTGACAGTCATTCCAGCCATTTGAGCACTAGCAGGATTCG 119
consensus_2588#1      TTTGTTCAGCCTCC---TTTACGAAAAATGTTTATAATACTTG-----TAGCCAACTCAG 94
                      **  *  **  * *   * *  ** *    **      * ***     ****    *  *

consensus_2588#0      TCCCATGTGCTGAGGTAGGGATTA-AACAA---ATTGTACGTTTGTGTTCACCTTTCCTA 175
consensus_2588#1      CTCAAAATG--AACATAAGAACCATAACCACTCACTGTACGTTTGTGTTCACCTTTCCTA 152
                        * *  **   *  ** * *  * *** *   * *************************

consensus_2588#0      TCCAAATATCCTTTGATAGCTTTTAGTCCAGCGTACTCACCCTGTGCTCCACTATTCGGT 235
consensus_2588#1      TCCAAATATCCTTTGATAGCTTTTAGTCCAGCGTACTCACCCTGTGCTCCACTATTCGGT 212
                      ************************************************************

consensus_2588#0      GCAAGACAAACATAATCATAGCCAGTTATCTCTTTGATGTCATTTTCCAGTTGTGCAATC 295
consensus_2588#1      GCAAGACAAACATAATCATAGCCAGT---------------------------------- 238
                      **************************                                  

consensus_2588#0      AATTCCAAATAACCAGTAACTTGTTTTTTCGGTACAAAAGGATGCA 341
consensus_2588#1      ----------------------------------------------