cluster # 2591

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2591 cluster # 2591 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2591#0 length = 593 sequences # 1

consensus_2591#1 length = 414 sequences # 1

consensusID : consensus_2591#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [TAGTTAACCGTGTTCATTCATACAAAACTGTATGGGGGTTATTGAATATTATGAAATTGTTTAAACTGTAGTAGTTGGGTTTGTTTACACTTATTACTTCATGTTGCTGTTCCACAATTCAAAGTACCTATTACAAACTATCTTTAAATTGCTGTCAGAAGAGTAATCATTCATTTCTGAAGAATCTCGTCGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATTAAATGATGATAAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATTGTCTATTTTAACTGAAGCTGTGCCACGGTTACAATCATATGAAATTGCATCTACGGTTCAGAATAAATCAAAATCTGTTGATTTGAATACATCACTAACAGCTGTAGATACAAAATCACCCAATATTGTCGTAAAGAAAATTAAAGATCACAATTTGCCGATGAATGATTTGATCACTCCATTAGTTAATCATCTTACAAGCATATTAAACATGGAGCAAAATTTGAAACANATAGAAGCANATACAAATCAAGCAAATGTTCTAGAGTCTGATACAGGTAGTGATCTGGAAT]

[+] EMBL CD090236             [TAGTTAACCGTGTTCATTCATACAAAACTGTATGGGGGTTATTGAATATTATGAAATTGTTTAAACTGTAGTAGTTGGGTTTGTTTACACTTATTACTTCATGTTGCTGTTCCACAATTCAAAGTACCTATTACAAACTATCTTTAAATTGCTGTCAGAAGAGTAATCATTCATTTCTGAAGAATCTCGTCGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATTAAATGATGATAAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATTGTCTATTTTAACTGAAGCTGTGCCACGGTTACAATCATATGAAATTGCATCTACGGTTCAGAATAAATCAAAATCTGTTGATTTGAATACATCACTAACAGCTGTAGATACAAAATCACCCAATATTGTCGTAAAGAAAATTAAAGATCACAATTTGCCGATGAATGATTTGATCACTCCATTAGTTAATCATCTTACAAGCATATTAAACATGGAGCAAAATTTGAAACANATAGAAGCANATACAAATCAAGCAAATGTTCTAGAGTCTGATACAGGTAGTGATCTGGAAT]




>consensus_2591#0
TAGTTAACCGTGTTCATTCATACAAAACTGTATGGGGGTTATTGAATATTATGAAATTGT
TTAAACTGTAGTAGTTGGGTTTGTTTACACTTATTACTTCATGTTGCTGTTCCACAATTC
AAAGTACCTATTACAAACTATCTTTAAATTGCTGTCAGAAGAGTAATCATTCATTTCTGA
AGAATCTCGTCGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATT
AAATGATGATAAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATT
GTCTATTTTAACTGAAGCTGTGCCACGGTTACAATCATATGAAATTGCATCTACGGTTCA
GAATAAATCAAAATCTGTTGATTTGAATACATCACTAACAGCTGTAGATACAAAATCACC
CAATATTGTCGTAAAGAAAATTAAAGATCACAATTTGCCGATGAATGATTTGATCACTCC
ATTAGTTAATCATCTTACAAGCATATTAAACATGGAGCAAAATTTGAAACANATAGAAGC
ANATACAAATCAAGCAAATGTTCTAGAGTCTGATACAGGTAGTGATCTGGAAT

consensusID : consensus_2591#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence

                              [TAATAACATATAAAGCATCAATTTTGCGCGAAATCAACTGGTTGTTTGCAAACTCTCAATAGAAATGTGTCAAACACGGATCTTTATGAAGGACCCCAATTTATTATTCTTGATGCTTTATATAAGCTTGGTCATAGTAATGGGCAGTCTGATTTCGATTCCGTTCACAAAGTATTTTCTCGTCTTCATCTAAATGCAGTCCATTTCGATTATTTGTTCATAAAAGCAGACCCGTCAAGAACAGTTGGTGGTGACAACAGGTCATTATTTGCTCGAGTTGCTGAAGCCCGAGAATCTCGTCGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATTAAATGATGATAAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATTGTCT]

[+] EMBL CD116248             [TAATAACATATAAAGCATCAATTTTGCGCGAAATCAACTGGTTGTTTGCAAACTCTCAATAGAAATGTGTCAAACACGGATCTTTATGAAGGACCCCAATTTATTATTCTTGATGCTTTATATAAGCTTGGTCATAGTAATGGGCAGTCTGATTTCGATTCCGTTCACAAAGTATTTTCTCGTCTTCATCTAAATGCAGTCCATTTCGATTATTTGTTCATAAAAGCAGACCCGTCAAGAACAGTTGGTGGTGACAACAGGTCATTATTTGCTCGAGTTGCTGAAGCCCGAGAATCTCGTCGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATTAAATGATGATAAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATTGTCT]




>consensus_2591#1
TAATAACATATAAAGCATCAATTTTGCGCGAAATCAACTGGTTGTTTGCAAACTCTCAAT
AGAAATGTGTCAAACACGGATCTTTATGAAGGACCCCAATTTATTATTCTTGATGCTTTA
TATAAGCTTGGTCATAGTAATGGGCAGTCTGATTTCGATTCCGTTCACAAAGTATTTTCT
CGTCTTCATCTAAATGCAGTCCATTTCGATTATTTGTTCATAAAAGCAGACCCGTCAAGA
ACAGTTGGTGGTGACAACAGGTCATTATTTGCTCGAGTTGCTGAAGCCCGAGAATCTCGT
CGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATTAAATGATGAT
AAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATTGTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2591#0      ------------------------------------------------------------
consensus_2591#1      TAATAACATATAAAGCATCAATTTTGCGCGAAATCAACTGGTTGTTTGCAAACTCTCAAT 60
                                                                                  

consensus_2591#0      ----------------------------------------TAGTTAACCGTGTTCATTCA 20
consensus_2591#1      AGAAATGTGTCAAACACGGATCTTTATGAAGGACCCCAATTTATTATTCTTGATGCTTTA 120
                                                              *  ***  * ** *  ** *

consensus_2591#0      TACAAAACTGTATGGGGGTTATTGAATATTATGAAATTGTTTAAACTGTAGTAGT-TGGG 79
consensus_2591#1      TATAAGCTTGGTCATAG--TAATGGGCAGTCTGATTTCGATTCCGTTCACAAAGTATTTT 178
                      ** **   **      *  ** **   * * ***  * * **    *     *** *   

consensus_2591#0      TTTGTTTACACTTAT---TACTTCATGTTGCTGTTCCACAATTCAAAGTA--CCTATTAC 134
consensus_2591#1      CTCGTCTTCATCTAAATGCAGTCCATTTCGATTATTTGTTCATAAAAGCAGACCCGTCAA 238
                       * ** * **  **     * * *** * * *  *       * **** *  **  * * 

consensus_2591#0      AAACTATCTTTAAATTGCTGTCAGAAGAGTAATCATTCA--TTTCTGAAG------AATC 186
consensus_2591#1      GAACAGTTGGTGG--TGACAACAGGTCATTATTTGCTCGAGTTGCTGAAGCCCGAGAATC 296
                       ***  *   *    **    ***   * ** *   **   ** ******      ****

consensus_2591#0      TCGTCGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATTAAATGA 246
consensus_2591#1      TCGTCGACGTAGTTTACGAATACGGAAAACCAGGGAGACTGATTTGGAATTATTAAATGA 356
                      ************************************************************

consensus_2591#0      TGATAAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATTGTCTAT 306
consensus_2591#1      TGATAAGAAGGTCTATTCAGAAAGAGTTCGCTTACGATTTCTTAGTATGTTATTGTCT-- 414
                      **********************************************************  

consensus_2591#0      TTTAACTGAAGCTGTGCCACGGTTACAATCATATGAAATTGCATCTACGGTTCAGAATAA 366
consensus_2591#1      ------------------------------------------------------------
                                                                                  

consensus_2591#0      ATCAAAATCTGTTGATTTGAATACATCACTAACAGCTGTAGATACAAAATCACCCAATAT 426
consensus_2591#1      ------------------------------------------------------------
                                                                                  

consensus_2591#0      TGTCGTAAAGAAAATTAAAGATCACAATTTGCCGATGAATGATTTGATCACTCCATTAGT 486
consensus_2591#1      ------------------------------------------------------------
                                                                                  

consensus_2591#0      TAATCATCTTACAAGCATATTAAACATGGAGCAAAATTTGAAACANATAGAAGCANATAC 546
consensus_2591#1      ------------------------------------------------------------
                                                                                  

consensus_2591#0      AAATCAAGCAAATGTTCTAGAGTCTGATACAGGTAGTGATCTGGAAT 593
consensus_2591#1      -----------------------------------------------