cluster # 262

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Schistosoma mansoni
cluster # 262 cluster # 262 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_262#0 length = 604 sequences # 1

consensus_262#1 length = 102 sequences # 1

consensusID : consensus_262#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence

                              [ACCGATCGTGATGAACCAATCGAGACATCTGTGGTCAAATACTAGTAACTTGTTAGTGGTCGGAATTGCTGATTGTGATGAACCAATCGAGCTATACTGGCTGGAACAATCGTTATTCAAGGTCCTACCATGCCAGACAGGTCGGTTGAAGAGCGGTGAGACTAAAAGCAGCAAACCCAAGGTCCGAAGGCGAAGTCGTACTGCCGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTCTTTGAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACCCTAAAAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGTGGTAAGGTCCCAAAAAGTACGGAGCTAACACAAAAAGGTCGTGTGTGACCGACCTCAAGCAGTTGCCCCTTGGGCACTGCGGTCACGCTCTCAGGGCACTAAGACCACTTCTAACCCAATTTCCTTTCCAGGTACCTCTAGAAGAACCCTTCCACGGTGTGAGCAGCTGGGAAGTATAACTGCCCTCATACCTATAACAGCACTCAAGATCACTGTATTCATAATCAATCTCCCTATTCAATTCCTATT]

[+] EMBL CD114231             [ACCGATCGTGATGAACCAATCGAGACATCTGTGGTCAAATACTAGTAACTTGTTAGTGGTCGGAATTGCTGATTGTGATGAACCAATCGAGCTATACTGGCTGGAACAATCGTTATTCAAGGTCCTACCATGCCAGACAGGTCGGTTGAAGAGCGGTGAGACTAAAAGCAGCAAACCCAAGGTCCGAAGGCGAAGTCGTACTGCCGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTCTTTGAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACCCTAAAAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGTGGTAAGGTCCCAAAAAGTACGGAGCTAACACAAAAAGGTCGTGTGTGACCGACCTCAAGCAGTTGCCCCTTGGGCACTGCGGTCACGCTCTCAGGGCACTAAGACCACTTCTAACCCAATTTCCTTTCCAGGTACCTCTAGAAGAACCCTTCCACGGTGTGAGCAGCTGGGAAGTATAACTGCCCTCATACCTATAACAGCACTCAAGATCACTGTATTCATAATCAATCTCCCTATTCAATTCCTATT]




>consensus_262#0
ACCGATCGTGATGAACCAATCGAGACATCTGTGGTCAAATACTAGTAACTTGTTAGTGGT
CGGAATTGCTGATTGTGATGAACCAATCGAGCTATACTGGCTGGAACAATCGTTATTCAA
GGTCCTACCATGCCAGACAGGTCGGTTGAAGAGCGGTGAGACTAAAAGCAGCAAACCCAA
GGTCCGAAGGCGAAGTCGTACTGCCGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTC
TTTGAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAAGGAGGGGTGGGGTTAGAAA
AGGTCGACCCTAAAAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGTGGTAA
GGTCCCAAAAAGTACGGAGCTAACACAAAAAGGTCGTGTGTGACCGACCTCAAGCAGTTG
CCCCTTGGGCACTGCGGTCACGCTCTCAGGGCACTAAGACCACTTCTAACCCAATTTCCT
TTCCAGGTACCTCTAGAAGAACCCTTCCACGGTGTGAGCAGCTGGGAAGTATAACTGCCC
TCATACCTATAACAGCACTCAAGATCACTGTATTCATAATCAATCTCCCTATTCAATTCC
TATT

consensusID : consensus_262#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 102
fasta sequence

                              [AAACCGTGTCGGTTTTGCGAAACGTCTTCATCCAGATTCTATTCATCGTACCAAAACATATATACCTATGATGCGATATCCTGCTCATCAGTCACAGCTGCT]

[+] EMBL SM032                [AAACCGTGTCGGTTTTGCGAAACGTCTTCATCCAGATTCTATTCATCGTACCAAAACATATATACCTATGATGCGATATCCTGCTCATCAGTCACAGCTGCT]




>consensus_262#1
AAACCGTGTCGGTTTTGCGAAACGTCTTCATCCAGATTCTATTCATCGTACCAAAACATA
TATACCTATGATGCGATATCCTGCTCATCAGTCACAGCTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_262#0      ACCGATCGTGATGAACCAATCGAGACATCTGTGGTCAAATACTAGTAACTTGTTAGTGGT 60
consensus_262#1      ------------------------------------------------------------
                                                                                 

consensus_262#0      CGGAATTGCTGATTGTGATGAACCAATCGAGCTATACTGGCTGGAACAATCGTTATTCAA 120
consensus_262#1      ------------------------------------------------------------
                                                                                 

consensus_262#0      GGTCCTACCATGCCAGACAGGTCGGTTGAAGAGCGGTGAGACTAAAAGCAGCAAACCCAA 180
consensus_262#1      ------------------------------------------------------------
                                                                                 

consensus_262#0      GGTCCGAAGGCGAAGTCGTACTGCCGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTC 240
consensus_262#1      ------------------------------------------------------------
                                                                                 

consensus_262#0      TTTGAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAAGGAGGGGTGGGGTTAGAAA 300
consensus_262#1      ------------------------------------------------------------
                                                                                 

consensus_262#0      AGGTCGACCCTAAAAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGTGGTAA 360
consensus_262#1      ------------------------------------------------------------
                                                                                 

consensus_262#0      GGTCCCAAAAAGTACGGAGCTAACACAAAAAGGTCGTGTGTGACCGACCTCAAGCAGTTG 420
consensus_262#1      ------------------------------------------------------------
                                                                                 

consensus_262#0      CCCCTTGGGCACTGCGGTCACGCTCTCAGGGCACTAAGACCACTTCTAACCCAATTTCCT 480
consensus_262#1      -------------------AAACCGTGTCGGTTTTGCGAAACGTCTTCATCCAGATTCTA 41
                                        *  *  *   **   *  **    *  * * ***  ***  

consensus_262#0      TTCCAGGTACCTCTAGAAGAAC-CCTTCCACGGTGTGAGCAGCTGGGAAGT-ATAACTGC 538
consensus_262#1      TTCATCGTACCAAAACATATATACCTATGATGCGATATCCTGCTCATCAGTCACAGCTGC 101
                     ***   *****   * *   *  ***   * *   *   * ***    *** * * ****

consensus_262#0      CCTCATACCTATAACAGCACTCAAGATCACTGTATTCATAATCAATCTCCCTATTCAATT 598
consensus_262#1      T----------------------------------------------------------- 102
                                                                                 

consensus_262#0      CCTATT 604
consensus_262#1      ------