These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [ACCGATCGTGATGAACCAATCGAGACATCTGTGGTCAAATACTAGTAACTTGTTAGTGGTCGGAATTGCTGATTGTGATGAACCAATCGAGCTATACTGGCTGGAACAATCGTTATTCAAGGTCCTACCATGCCAGACAGGTCGGTTGAAGAGCGGTGAGACTAAAAGCAGCAAACCCAAGGTCCGAAGGCGAAGTCGTACTGCCGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTCTTTGAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACCCTAAAAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGTGGTAAGGTCCCAAAAAGTACGGAGCTAACACAAAAAGGTCGTGTGTGACCGACCTCAAGCAGTTGCCCCTTGGGCACTGCGGTCACGCTCTCAGGGCACTAAGACCACTTCTAACCCAATTTCCTTTCCAGGTACCTCTAGAAGAACCCTTCCACGGTGTGAGCAGCTGGGAAGTATAACTGCCCTCATACCTATAACAGCACTCAAGATCACTGTATTCATAATCAATCTCCCTATTCAATTCCTATT] [+] EMBL CD114231 [ACCGATCGTGATGAACCAATCGAGACATCTGTGGTCAAATACTAGTAACTTGTTAGTGGTCGGAATTGCTGATTGTGATGAACCAATCGAGCTATACTGGCTGGAACAATCGTTATTCAAGGTCCTACCATGCCAGACAGGTCGGTTGAAGAGCGGTGAGACTAAAAGCAGCAAACCCAAGGTCCGAAGGCGAAGTCGTACTGCCGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTCTTTGAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAAGGAGGGGTGGGGTTAGAAAAGGTCGACCCTAAAAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGTGGTAAGGTCCCAAAAAGTACGGAGCTAACACAAAAAGGTCGTGTGTGACCGACCTCAAGCAGTTGCCCCTTGGGCACTGCGGTCACGCTCTCAGGGCACTAAGACCACTTCTAACCCAATTTCCTTTCCAGGTACCTCTAGAAGAACCCTTCCACGGTGTGAGCAGCTGGGAAGTATAACTGCCCTCATACCTATAACAGCACTCAAGATCACTGTATTCATAATCAATCTCCCTATTCAATTCCTATT] consensusID : consensus_262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 102 fasta sequence [AAACCGTGTCGGTTTTGCGAAACGTCTTCATCCAGATTCTATTCATCGTACCAAAACATATATACCTATGATGCGATATCCTGCTCATCAGTCACAGCTGCT] [+] EMBL SM032 [AAACCGTGTCGGTTTTGCGAAACGTCTTCATCCAGATTCTATTCATCGTACCAAAACATATATACCTATGATGCGATATCCTGCTCATCAGTCACAGCTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_262#0 ACCGATCGTGATGAACCAATCGAGACATCTGTGGTCAAATACTAGTAACTTGTTAGTGGT 60 consensus_262#1 ------------------------------------------------------------ consensus_262#0 CGGAATTGCTGATTGTGATGAACCAATCGAGCTATACTGGCTGGAACAATCGTTATTCAA 120 consensus_262#1 ------------------------------------------------------------ consensus_262#0 GGTCCTACCATGCCAGACAGGTCGGTTGAAGAGCGGTGAGACTAAAAGCAGCAAACCCAA 180 consensus_262#1 ------------------------------------------------------------ consensus_262#0 GGTCCGAAGGCGAAGTCGTACTGCCGACTGTACAGAAGTGTGACGGCAGTAAGGTGTTTC 240 consensus_262#1 ------------------------------------------------------------ consensus_262#0 TTTGAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAAGGAGGGGTGGGGTTAGAAA 300 consensus_262#1 ------------------------------------------------------------ consensus_262#0 AGGTCGACCCTAAAAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGTGGTAA 360 consensus_262#1 ------------------------------------------------------------ consensus_262#0 GGTCCCAAAAAGTACGGAGCTAACACAAAAAGGTCGTGTGTGACCGACCTCAAGCAGTTG 420 consensus_262#1 ------------------------------------------------------------ consensus_262#0 CCCCTTGGGCACTGCGGTCACGCTCTCAGGGCACTAAGACCACTTCTAACCCAATTTCCT 480 consensus_262#1 -------------------AAACCGTGTCGGTTTTGCGAAACGTCTTCATCCAGATTCTA 41 * * * ** * ** * * * *** *** consensus_262#0 TTCCAGGTACCTCTAGAAGAAC-CCTTCCACGGTGTGAGCAGCTGGGAAGT-ATAACTGC 538 consensus_262#1 TTCATCGTACCAAAACATATATACCTATGATGCGATATCCTGCTCATCAGTCACAGCTGC 101 *** ***** * * * *** * * * * *** *** * * **** consensus_262#0 CCTCATACCTATAACAGCACTCAAGATCACTGTATTCATAATCAATCTCCCTATTCAATT 598 consensus_262#1 T----------------------------------------------------------- 102 consensus_262#0 CCTATT 604 consensus_262#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||