These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [GTAAACAACAACTCACCATTGAAATTTCCGATTTGAGTAGTAGTAATAATAATAACTTCTCTAAAAGTGAATCGTCTTATTTGATTGCGAATTCCAGTGAACTATCTACTCAACTCAGTGTAACTTCATCGCCTTCGCTTATCTTAAACACTGAAGACTGTGATATACAAAATTCTACTGATGAAGTGATTGATTTGAAGCAACGAACAAAATTTATGACATCAAATCTACTTGACTCAGATTGTCATTTAACACCAAGTATGGATTTATTTTCGATTGGGTAAGTTTTTTTGTTTAAAAAAGTTTTATACTATTGTTGTTTACTGGTAAATGTTCTCGTCGGCAGTTAATTTTGCTGGAGATGGAAACAAATTGACAAACAGTGTTTTAATATGCAACTAATCTGTTAAGAGTTAAGAAGTATGAAATTGCATTATTAGTCAAGATGTACAGAAAGATAAAAAATGAACATTAACTTTCTGACTAATCGATTTCAAATCACATCACTTAATGCTTATGGCTATCGTTTTGTGATTACCACGCTAATCATGGCTAGGACGTTTTCACTTTGTCACTCACCTTAGTTCAACGGTCAATTGCTG] [+] EMBL CD090757 [GTAAACAACAACTCACCATTGAAATTTCCGATTTGAGTAGTAGTAATAATAATAACTTCTCTAAAAGTGAATCGTCTTATTTGATTGCGAATTCCAGTGAACTATCTACTCAACTCAGTGTAACTTCATCGCCTTCGCTTATCTTAAACACTGAAGACTGTGATATACAAAATTCTACTGATGAAGTGATTGATTTGAAGCAACGAACAAAATTTATGACATCAAATCTACTTGACTCAGATTGTCATTTAACACCAAGTATGGATTTATTTTCGATTGGGTAAGTTTTTTTGTTTAAAAAAGTTTTATACTATTGTTGTTTACTGGTAAATGTTCTCGTCGGCAGTTAATTTTGCTGGAGATGGAAACAAATTGACAAACAGTGTTTTAATATGCAACTAATCTGTTAAGAGTTAAGAAGTATGAAATTGCATTATTAGTCAAGATGTACAGAAAGATAAAAAATGAACATTAACTTTCTGACTAATCGATTTCAAATCACATCACTTAATGCTTATGGCTATCGTTTTGTGATTACCACGCTAATCATGGCTAGGACGTTTTCACTTTGTCACTCACCTTAGTTCAACGGTCAATTGCTG] consensusID : consensus_2621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [AAATAAAGAATACAATATCGACTCTGGTAAACAACAACTCACCATTGAAAGTGTTCCGATTTGAGTAGTAGTAATAATAATAACTTCTCTAAAAGTGAATCGTCTTATTTGATTGCGAATTCCAGTGAACTATCTACTCAACTCAGTGTAACTTCATCGCCTTCGCTTATCTTAAACACTGAAGACTGTGATATACAAAATTCTACTGATGAAGTGATTGATTTGAAGCAACGAACAAAATTTATGACATCAAATCTACTTGACTCAGATTGTCATTTAACACCAAGTATGGATTTATTTTCGATTGGATGTGTTCTGTTGGAATTGTTTACTGA] [-] EMBL CD121923 [AAATAAAGAATACAATATCGACTCTGGTAAACAACAACTCACCATTGAAAGTGTTCCGATTTGAGTAGTAGTAATAATAATAACTTCTCTAAAAGTGAATCGTCTTATTTGATTGCGAATTCCAGTGAACTATCTACTCAACTCAGTGTAACTTCATCGCCTTCGCTTATCTTAAACACTGAAGACTGTGATATACAAAATTCTACTGATGAAGTGATTGATTTGAAGCAACGAACAAAATTTATGACATCAAATCTACTTGACTCAGATTGTCATTTAACACCAAGTATGGATTTATTTTCGATTGGATGTGTTCTGTTGGAATTGTTTACTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2621#0 --------------------------GTAAACAACAACTCACCATTGAAATT--TCCGAT 32 consensus_2621#1 AAATAAAGAATACAATATCGACTCTGGTAAACAACAACTCACCATTGAAAGTGTTCCGAT 60 ************************ * ****** consensus_2621#0 TTGAGTAGTAGTAATAATAATAACTTCTCTAAAAGTGAATCGTCTTATTTGATTGCGAAT 92 consensus_2621#1 TTGAGTAGTAGTAATAATAATAACTTCTCTAAAAGTGAATCGTCTTATTTGATTGCGAAT 120 ************************************************************ consensus_2621#0 TCCAGTGAACTATCTACTCAACTCAGTGTAACTTCATCGCCTTCGCTTATCTTAAACACT 152 consensus_2621#1 TCCAGTGAACTATCTACTCAACTCAGTGTAACTTCATCGCCTTCGCTTATCTTAAACACT 180 ************************************************************ consensus_2621#0 GAAGACTGTGATATACAAAATTCTACTGATGAAGTGATTGATTTGAAGCAACGAACAAAA 212 consensus_2621#1 GAAGACTGTGATATACAAAATTCTACTGATGAAGTGATTGATTTGAAGCAACGAACAAAA 240 ************************************************************ consensus_2621#0 TTTATGACATCAAATCTACTTGACTCAGATTGTCATTTAACACCAAGTATGGATTTATTT 272 consensus_2621#1 TTTATGACATCAAATCTACTTGACTCAGATTGTCATTTAACACCAAGTATGGATTTATTT 300 ************************************************************ consensus_2621#0 TCGATTGGGTAAGTTTTTTTGTTTAAAAAAGTTTTATACTATTGTTGTTTACTGGTAAAT 332 consensus_2621#1 TCGATTGGATGTGTTCTGTTG-------GAATTGTTTACTGA------------------ 335 ******** * *** * *** * ** * **** consensus_2621#0 GTTCTCGTCGGCAGTTAATTTTGCTGGAGATGGAAACAAATTGACAAACAGTGTTTTAAT 392 consensus_2621#1 ------------------------------------------------------------ consensus_2621#0 ATGCAACTAATCTGTTAAGAGTTAAGAAGTATGAAATTGCATTATTAGTCAAGATGTACA 452 consensus_2621#1 ------------------------------------------------------------ consensus_2621#0 GAAAGATAAAAAATGAACATTAACTTTCTGACTAATCGATTTCAAATCACATCACTTAAT 512 consensus_2621#1 ------------------------------------------------------------ consensus_2621#0 GCTTATGGCTATCGTTTTGTGATTACCACGCTAATCATGGCTAGGACGTTTTCACTTTGT 572 consensus_2621#1 ------------------------------------------------------------ consensus_2621#0 CACTCACCTTAGTTCAACGGTCAATTGCTG 602 consensus_2621#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||