cluster # 2710

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Schistosoma mansoni
cluster # 2710 cluster # 2710 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2710#0 length = 523 sequences # 1

consensus_2710#1 length = 385 sequences # 1

consensusID : consensus_2710#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence

                              [CTAGGTGATTCTTTACCATCCTCTTGTTCTTCGGCTTCGAGATCAGTAAAGTCTAAATCTTTCAGACGAAGGGGCCGTCGTTTAACTTTATCCAAACAACGTTGCCAGAATGTTTCCACATTAGTTTCTGCTTCGCTTAGAATTGAACTTGCTGGTGTATTTGTTTGTTCTGTATTTACCTTTTTAGGAGATACTAAAGAGCCAGGAGAACTTGGTGGTTTTGTTGATATCCCTGATTCAAAACGATCTTTGACCGACAAAATTTTACCAGTACGTTCACGTGGTAGCTGAGGTTTTACGGGCTCCTCAGCATTTTCAAATGATGAATGTTTTTCTTTCAATAAATGCACTGTACCAGTTGTATTGGATAAAGTAACTGATGGTGGACTAATCGGTGTAGAATTTTCAGATTGTTTCTGTGATGCACGACTAAGTGCTTCTATTTTATTTTTCAATGATCCAGCAACTGGACTATCAAGTACAACGATAGATTTGCCTTTTACATCATCCATGGATTCAGCAT]

[+] EMBL CD066876             [CTAGGTGATTCTTTACCATCCTCTTGTTCTTCGGCTTCGAGATCAGTAAAGTCTAAATCTTTCAGACGAAGGGGCCGTCGTTTAACTTTATCCAAACAACGTTGCCAGAATGTTTCCACATTAGTTTCTGCTTCGCTTAGAATTGAACTTGCTGGTGTATTTGTTTGTTCTGTATTTACCTTTTTAGGAGATACTAAAGAGCCAGGAGAACTTGGTGGTTTTGTTGATATCCCTGATTCAAAACGATCTTTGACCGACAAAATTTTACCAGTACGTTCACGTGGTAGCTGAGGTTTTACGGGCTCCTCAGCATTTTCAAATGATGAATGTTTTTCTTTCAATAAATGCACTGTACCAGTTGTATTGGATAAAGTAACTGATGGTGGACTAATCGGTGTAGAATTTTCAGATTGTTTCTGTGATGCACGACTAAGTGCTTCTATTTTATTTTTCAATGATCCAGCAACTGGACTATCAAGTACAACGATAGATTTGCCTTTTACATCATCCATGGATTCAGCAT]




>consensus_2710#0
CTAGGTGATTCTTTACCATCCTCTTGTTCTTCGGCTTCGAGATCAGTAAAGTCTAAATCT
TTCAGACGAAGGGGCCGTCGTTTAACTTTATCCAAACAACGTTGCCAGAATGTTTCCACA
TTAGTTTCTGCTTCGCTTAGAATTGAACTTGCTGGTGTATTTGTTTGTTCTGTATTTACC
TTTTTAGGAGATACTAAAGAGCCAGGAGAACTTGGTGGTTTTGTTGATATCCCTGATTCA
AAACGATCTTTGACCGACAAAATTTTACCAGTACGTTCACGTGGTAGCTGAGGTTTTACG
GGCTCCTCAGCATTTTCAAATGATGAATGTTTTTCTTTCAATAAATGCACTGTACCAGTT
GTATTGGATAAAGTAACTGATGGTGGACTAATCGGTGTAGAATTTTCAGATTGTTTCTGT
GATGCACGACTAAGTGCTTCTATTTTATTTTTCAATGATCCAGCAACTGGACTATCAAGT
ACAACGATAGATTTGCCTTTTACATCATCCATGGATTCAGCAT

consensusID : consensus_2710#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [CTAGGTGATTCTTTACCATCCTCTTGTTCTTCGGCTTCGAGATCAGTAAAGTCTAAATCTTTCAGACGAAGTGGCCGTCGTTTAACTTTATCCAAACAACGTTGCCAGAATGTTTCCACATTAGTTTCTGCTTCGCTTAGAATTGAACTTGCTGGTGTATTTGTTTGTTCTGTATTTACCTTTTTAGGAGATACTAAAGAGCCAGGAGAACTTGGTGGTTTTGTTGATATCCCTGATTCAAAACGATCTTTGACCGACAAAATTTTACCAGTACGTTCACGTGGTAGCTGAGGTTTTACGGGCTCCTCAGCCTATATCACGAATATAAAATTAAGTTCATGAAAAATTAGAAAAATATTATCACAAAAATAGAATCAAATAATTN]

[+] EMBL CD066797             [CTAGGTGATTCTTTACCATCCTCTTGTTCTTCGGCTTCGAGATCAGTAAAGTCTAAATCTTTCAGACGAAGTGGCCGTCGTTTAACTTTATCCAAACAACGTTGCCAGAATGTTTCCACATTAGTTTCTGCTTCGCTTAGAATTGAACTTGCTGGTGTATTTGTTTGTTCTGTATTTACCTTTTTAGGAGATACTAAAGAGCCAGGAGAACTTGGTGGTTTTGTTGATATCCCTGATTCAAAACGATCTTTGACCGACAAAATTTTACCAGTACGTTCACGTGGTAGCTGAGGTTTTACGGGCTCCTCAGCCTATATCACGAATATAAAATTAAGTTCATGAAAAATTAGAAAAATATTATCACAAAAATAGAATCAAATAATTN]




>consensus_2710#1
CTAGGTGATTCTTTACCATCCTCTTGTTCTTCGGCTTCGAGATCAGTAAAGTCTAAATCT
TTCAGACGAAGTGGCCGTCGTTTAACTTTATCCAAACAACGTTGCCAGAATGTTTCCACA
TTAGTTTCTGCTTCGCTTAGAATTGAACTTGCTGGTGTATTTGTTTGTTCTGTATTTACC
TTTTTAGGAGATACTAAAGAGCCAGGAGAACTTGGTGGTTTTGTTGATATCCCTGATTCA
AAACGATCTTTGACCGACAAAATTTTACCAGTACGTTCACGTGGTAGCTGAGGTTTTACG
GGCTCCTCAGCCTATATCACGAATATAAAATTAAGTTCATGAAAAATTAGAAAAATATTA
TCACAAAAATAGAATCAAATAATTN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2710#0      CTAGGTGATTCTTTACCATCCTCTTGTTCTTCGGCTTCGAGATCAGTAAAGTCTAAATCT 60
consensus_2710#1      CTAGGTGATTCTTTACCATCCTCTTGTTCTTCGGCTTCGAGATCAGTAAAGTCTAAATCT 60
                      ************************************************************

consensus_2710#0      TTCAGACGAAGGGGCCGTCGTTTAACTTTATCCAAACAACGTTGCCAGAATGTTTCCACA 120
consensus_2710#1      TTCAGACGAAGTGGCCGTCGTTTAACTTTATCCAAACAACGTTGCCAGAATGTTTCCACA 120
                      *********** ************************************************

consensus_2710#0      TTAGTTTCTGCTTCGCTTAGAATTGAACTTGCTGGTGTATTTGTTTGTTCTGTATTTACC 180
consensus_2710#1      TTAGTTTCTGCTTCGCTTAGAATTGAACTTGCTGGTGTATTTGTTTGTTCTGTATTTACC 180
                      ************************************************************

consensus_2710#0      TTTTTAGGAGATACTAAAGAGCCAGGAGAACTTGGTGGTTTTGTTGATATCCCTGATTCA 240
consensus_2710#1      TTTTTAGGAGATACTAAAGAGCCAGGAGAACTTGGTGGTTTTGTTGATATCCCTGATTCA 240
                      ************************************************************

consensus_2710#0      AAACGATCTTTGACCGACAAAATTTTACCAGTACGTTCACGTGGTAGCTGAGGTTTTACG 300
consensus_2710#1      AAACGATCTTTGACCGACAAAATTTTACCAGTACGTTCACGTGGTAGCTGAGGTTTTACG 300
                      ************************************************************

consensus_2710#0      GGCTCCTCAGCAT---TTTCAAATGATGAATGTTTTTCTTTCAA---TAAATGCACTGTA 354
consensus_2710#1      GGCTCCTCAGCCTATATCACGAATATAAAATTAAGTTCATGAAAAATTAGAAAAATATTA 360
                      *********** *   *  * ***    ***    *** *  **   ** *   *   **

consensus_2710#0      CCAGTTGTATTGGATAAAGTAACTGATGGTGGACTAATCGGTGTAGAATTTTCAGATTGT 414
consensus_2710#1      TCACAAAAATAGAATCAAATAATTN----------------------------------- 385
                       **     ** * ** ** *** *                                    

consensus_2710#0      TTCTGTGATGCACGACTAAGTGCTTCTATTTTATTTTTCAATGATCCAGCAACTGGACTA 474
consensus_2710#1      ------------------------------------------------------------
                                                                                  

consensus_2710#0      TCAAGTACAACGATAGATTTGCCTTTTACATCATCCATGGATTCAGCAT 523
consensus_2710#1      -------------------------------------------------