These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [CGACTACAGACCGACTTCCATCACAAAATTTTTGAGACCTGACAGTATTATCTGTAGAACACATGTTAACAAAATATCGCACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAACTGATATCAAAAAATTTTAGCTGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTCTGAACGTTACATCTTTAGACAGTTGGCTAAATGGCCTTAATAACTCCTCAAACGTCAGATTATCTCGCAGACACAGTTCATTAACATCAGGACTAACAAGCAACCCAACGCAAGGGCTGAACACAAAGTTAATGAATTTTTCTCCTGAAATACTGCACTTCGCCATATTAGCACAGAACTACTAGCAAGAGTTGAACACCAACTCATTAAGAAAAAGTAACGCACAAATC] [+] EMBL CD196824 [CGACTACAGACCGACTTCCATCACAAAATTTTTGAGACCTGACAGTATTATCTGTAGAACACATGTTAACAAAATATCGCACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAACTGATATCAAAAAATTTTAGCTGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTCTGAACGTTACATCTTTAGACAGTTGGCTAAATGGCCTTAATAACTCCTCAAACGTCAGATTATCTCGCAGACACAGTTCATTAACATCAGGACTAACAAGCAACCCAACGCAAGGGCTGAACACAAAGTTAATGAATTTTTCTCCTGAAATACTGCACTTCGCCATATTAGCACAGAACTACTAGCAAGAGTTGAACACCAACTCATTAAGAAAAAGTAACGCACAAATC] consensusID : consensus_2722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [ACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAACTGATATCAAAAAATTTTAGCTGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTCTGAACGTTACTAAAAATAACAATGAGGCAAACATTAGGAACGAACCATCTTTAGACAGTTGGCTAAATGGCCTTAATAACTCCTCAAACGTCAGATTATCTCGCAGACACAGTTCATTAACATCAGGACTAACAAGCAACCCAACACAAGGGCTGAACACAAAGTTAATGAATTTTTCTCCTGAAATACTGCACTTCGCCATATTAGCACAGAACTACTAGCAAGAGTTGAACACCAACTCACTAAGAAAAAGTAACGCACAAATCCAATTACTGCT] [-] EMBL CD092847 [ACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAACTGATATCAAAAAATTTTAGCTGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTCTGAACGTTACTAAAAATAACAATGAGGCAAACATTAGGAACGAACCATCTTTAGACAGTTGGCTAAATGGCCTTAATAACTCCTCAAACGTCAGATTATCTCGCAGACACAGTTCATTAACATCAGGACTAACAAGCAACCCAACACAAGGGCTGAACACAAAGTTAATGAATTTTTCTCCTGAAATACTGCACTTCGCCATATTAGCACAGAACTACTAGCAAGAGTTGAACACCAACTCACTAAGAAAAAGTAACGCACAAATCCAATTACTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2722#0 CGACTACAGACCGACTTCCATCACAAAATTTTTGAGACCTGACAGTATTATCTGTAGAAC 60 consensus_2722#1 ------------------------------------------------------------ consensus_2722#0 ACATGTTAACAAAATATCGCACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAAC 120 consensus_2722#1 --------------------ACCCAAGATTGTGTTATGTGTTTGGGTGAAAGACATGAAC 40 **************************************** consensus_2722#0 TGATATCAAAAAATTTTAGCTGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTC 180 consensus_2722#1 TGATATCAAAAAATTTTAGCTGTAAGTTTTTCACAGAATGGACGACGTTATTATTGTCTC 100 ************************************************************ consensus_2722#0 TGAACGTTAC------------------------------------ATCTTTAGACAGTT 204 consensus_2722#1 TGAACGTTACTAAAAATAACAATGAGGCAAACATTAGGAACGAACCATCTTTAGACAGTT 160 ********** ************** consensus_2722#0 GGCTAAATGGCCTTAATAACTCCTCAAACGTCAGATTATCTCGCAGACACAGTTCATTAA 264 consensus_2722#1 GGCTAAATGGCCTTAATAACTCCTCAAACGTCAGATTATCTCGCAGACACAGTTCATTAA 220 ************************************************************ consensus_2722#0 CATCAGGACTAACAAGCAACCCAACGCAAGGGCTGAACACAAAGTTAATGAATTTTTCTC 324 consensus_2722#1 CATCAGGACTAACAAGCAACCCAACACAAGGGCTGAACACAAAGTTAATGAATTTTTCTC 280 ************************* ********************************** consensus_2722#0 CTGAAATACTGCACTTCGCCATATTAGCACAGAACTACTAGCAAGAGTTGAACACCAACT 384 consensus_2722#1 CTGAAATACTGCACTTCGCCATATTAGCACAGAACTACTAGCAAGAGTTGAACACCAACT 340 ************************************************************ consensus_2722#0 CATTAAGAAAAAGTAACGCACAAATC----------- 410 consensus_2722#1 CACTAAGAAAAAGTAACGCACAAATCCAATTACTGCT 377 ** *********************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||