cluster # 2743

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Schistosoma mansoni
cluster # 2743 cluster # 2743 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2743#0 length = 366 sequences # 1

consensus_2743#1 length = 287 sequences # 1

consensusID : consensus_2743#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [ACTTCAAACACGAAAGAAACTTCGGGGAAAGAAAAGTTTTTACTTGAATTACAATCGAATCCACAACGAGATTCGCCGCGTACGTTGATATTTTCACAAAGTATAAAATTTCTTGATATGGCTGAAAAAGTCATTCTGGATATAAGATGTCCTGTTAATAATCATACATTTGGTGATGATAATATTCACTATCCTACACAACATCGTATTTTACGATTAGATGGTCGTACTGCAAAAGTATGCGATCGTCTAAGTATAATTAATAAATTTCAAAATGATAAATCTTATACAGTTATGCTGTTAACTACTCAAGTTGGTGGTGTTGGACTGACAATTACATCAGCTAATCGTGTTATCATTCTCGAC]

[+] EMBL CD093191             [ACTTCAAACACGAAAGAAACTTCGGGGAAAGAAAAGTTTTTACTTGAATTACAATCGAATCCACAACGAGATTCGCCGCGTACGTTGATATTTTCACAAAGTATAAAATTTCTTGATATGGCTGAAAAAGTCATTCTGGATATAAGATGTCCTGTTAATAATCATACATTTGGTGATGATAATATTCACTATCCTACACAACATCGTATTTTACGATTAGATGGTCGTACTGCAAAAGTATGCGATCGTCTAAGTATAATTAATAAATTTCAAAATGATAAATCTTATACAGTTATGCTGTTAACTACTCAAGTTGGTGGTGTTGGACTGACAATTACATCAGCTAATCGTGTTATCATTCTCGAC]




>consensus_2743#0
ACTTCAAACACGAAAGAAACTTCGGGGAAAGAAAAGTTTTTACTTGAATTACAATCGAAT
CCACAACGAGATTCGCCGCGTACGTTGATATTTTCACAAAGTATAAAATTTCTTGATATG
GCTGAAAAAGTCATTCTGGATATAAGATGTCCTGTTAATAATCATACATTTGGTGATGAT
AATATTCACTATCCTACACAACATCGTATTTTACGATTAGATGGTCGTACTGCAAAAGTA
TGCGATCGTCTAAGTATAATTAATAAATTTCAAAATGATAAATCTTATACAGTTATGCTG
TTAACTACTCAAGTTGGTGGTGTTGGACTGACAATTACATCAGCTAATCGTGTTATCATT
CTCGAC

consensusID : consensus_2743#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence

                              [GATCATCCACGTCTTTTGTCTACTGAACAATGTTTAAATCTTAATTTAAATTATGACGATGGCAATAGCAAAGGAGATAATTTTCATATTAATGAAATTGTTTCACATAAAATACATTTTCCACCATCAGAACAACTGATTAAAGAATCTGGGAAATTCTTGTTTCTGCATTGTTTGATGAAACAGTTTTTACTTGAATTACAATCGAATCCACAACGAGATTCGCCGCGTACGTTGATATTTTCACAAAGTATAAAATTTCTTGATATGGCTGAAAAAGTCATTCT]

[-] EMBL CD116082             [GATCATCCACGTCTTTTGTCTACTGAACAATGTTTAAATCTTAATTTAAATTATGACGATGGCAATAGCAAAGGAGATAATTTTCATATTAATGAAATTGTTTCACATAAAATACATTTTCCACCATCAGAACAACTGATTAAAGAATCTGGGAAATTCTTGTTTCTGCATTGTTTGATGAAACAGTTTTTACTTGAATTACAATCGAATCCACAACGAGATTCGCCGCGTACGTTGATATTTTCACAAAGTATAAAATTTCTTGATATGGCTGAAAAAGTCATTCT]




>consensus_2743#1
GATCATCCACGTCTTTTGTCTACTGAACAATGTTTAAATCTTAATTTAAATTATGACGAT
GGCAATAGCAAAGGAGATAATTTTCATATTAATGAAATTGTTTCACATAAAATACATTTT
CCACCATCAGAACAACTGATTAAAGAATCTGGGAAATTCTTGTTTCTGCATTGTTTGATG
AAACAGTTTTTACTTGAATTACAATCGAATCCACAACGAGATTCGCCGCGTACGTTGATA
TTTTCACAAAGTATAAAATTTCTTGATATGGCTGAAAAAGTCATTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2743#0      ACTTCAAACACGAAAGAAACTTCGGGGAAAGAAAAGTTTTTACTTGAATTACAATCGAAT 60
consensus_2743#1      ------------------------------------------------------------
                                                                                  

consensus_2743#0      CCACAACGAGATTCGCCGCGTACGTTGATATTTTCACAAAGTATAAAATTTCTTGATATG 120
consensus_2743#1      ---------GATCATCCACGTCTTTTGTCTACTGAACAATGTTTAAA---TCTTAATTTA 48
                               ***   ** ***   ***     *  **** ** ****   **** ** * 

consensus_2743#0      GCTGAAAAAGTCATTCTGGATATAAGATGTCCTGTTAATAATCATACATTTGGTGATGAT 180
consensus_2743#1      AATTATGACGATGGCAATAGCAAAGGAGATAATTTTCATATTAATGAAATTGTTTCACAT 108
                        * *  * *           * * **  *  * ** *** * **  * *** *    **

consensus_2743#0      AATATTCACTATCCTACACAACATCGTATTTTACGATTAGATGGTCGTACTGCAAAAGTA 240
consensus_2743#1      AAAATACATTTTCC-----ACCATCAGAACAACTGATTAAAGAATC----TGGGAAATTC 159
                      ** ** ** * ***     * ****  *      ***** *   **    **  *** * 

consensus_2743#0      TGCGATCGTCTAAGTATAATTAATAAATTTCAAAATGA--TAAATCTTATACAGTTATGC 298
consensus_2743#1      TTGTTTCTGCATTGTTTGATGAAACAGTTTTTACTTGAATTACAATCGAATCCACAACGA 219
                      *    **  *   ** * ** **  * ***  *  ***  ** *    *  *    * * 

consensus_2743#0      TGTTAACTACTCAAGTTGGTGGTGTTGGACTG---ACAATTACATCAGCTAATCGTGTTA 355
consensus_2743#1      GATTCGCCGCGTACGTTGATATTTTCACAAAGTATAAAATTTCTTGATATGGCTGAAAAA 279
                        **  *  *  * **** *  * *   *  *   * **** * * *  *    *    *

consensus_2743#0      -TCATTCTCGAC 366
consensus_2743#1      GTCATTCT---- 287
                       *******