cluster # 2744

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Schistosoma mansoni
cluster # 2744 cluster # 2744 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2744#0 length = 421 sequences # 1

consensus_2744#1 length = 385 sequences # 1

consensusID : consensus_2744#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATTTTATTCTGAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCAACTGCATGAGATACTGATTTCTAGAACGTCCNNNCATTATCCAAAGACGATCACATAGAAGACAACTTTTGGTGTAACCAGTTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAATACATATACTGGAGTGAAAAACTCAGTCTGATGATTGTATGTACATCAATCCTCTAAACAGAAAGATCGTAATTATAATTTANAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCTGGATAGATAACGTAATAGTTAAATACATANCACTATAAAATTTAATGAATAGTAATTTTGTGAA]

[+] EMBL CD093197             [CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATTTTATTCTGAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCAACTGCATGAGATACTGATTTCTAGAACGTCCNNNCATTATCCAAAGACGATCACATAGAAGACAACTTTTGGTGTAACCAGTTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAATACATATACTGGAGTGAAAAACTCAGTCTGATGATTGTATGTACATCAATCCTCTAAACAGAAAGATCGTAATTATAATTTANAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCTGGATAGATAACGTAATAGTTAAATACATANCACTATAAAATTTAATGAATAGTAATTTTGTGAA]




>consensus_2744#0
CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATTTTATTCT
GAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCAACTGCATGAGATAC
TGATTTCTAGAACGTCCNNNCATTATCCAAAGACGATCACATAGAAGACAACTTTTGGTG
TAACCAGTTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAATA
CATATACTGGAGTGAAAAACTCAGTCTGATGATTGTATGTACATCAATCCTCTAAACAGA
AAGATCGTAATTATAATTTANAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCTGGA
TAGATAACGTAATAGTTAAATACATANCACTATAAAATTTAATGAATAGTAATTTTGTGA
A

consensusID : consensus_2744#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence

                              [CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATGTTATTCTAAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCATTGCTTNAATTNTGATTTGCACGACCGTTACCTCTTTNTCCAAAAACTTCACTTAAANNAACTCTGTGGACGTCCGTNNNTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAATACATATACTGGAGTGAAAAACTCAGTCCTGATGATTGATGTCATCNNNAATCCTCTAAACAGAAAGATCGTAATTATAATTTAAAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCTGGATAGATAAACGTATAGTTAAATACAT]

[+] EMBL CD093242             [CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATGTTATTCTAAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCATTGCTTNAATTNTGATTTGCACGACCGTTACCTCTTTNTCCAAAAACTTCACTTAAANNAACTCTGTGGACGTCCGTNNNTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAATACATATACTGGAGTGAAAAACTCAGTCCTGATGATTGATGTCATCNNNAATCCTCTAAACAGAAAGATCGTAATTATAATTTAAAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCTGGATAGATAAACGTATAGTTAAATACAT]




>consensus_2744#1
CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATGTTATTCT
AAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCATTGCTTNAATTNTG
ATTTGCACGACCGTTACCTCTTTNTCCAAAAACTTCACTTAAANNAACTCTGTGGACGTC
CGTNNNTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAATACA
TATACTGGAGTGAAAAACTCAGTCCTGATGATTGATGTCATCNNNAATCCTCTAAACAGA
AAGATCGTAATTATAATTTAAAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCTGGA
TAGATAAACGTATAGTTAAATACAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2744#0      CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATTTTATTCT 60
consensus_2744#1      CAACACAGATGGTTGTGAGGAGCTGATGAGAAACAAAGTATAACTAATTCATGTTATTCT 60
                      **************************************************** *******

consensus_2744#0      GAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCAACTGCATGAGATAC 120
consensus_2744#1      AAATCAATGTTTGTTACGGTTTTATTCAAATTCATAAAGGGAACCA-TTGCTTNA-ATTN 118
                       *********************************************  *** * * **  

consensus_2744#0      TGATTTCTA-GAACGTCCNNNCATTATCCAAAGACGATCACATAGAAGACAACTTTTGGT 179
consensus_2744#1      TGATTTGCACGACCGTTACCTCTTTNTCCAAAAACT-TCACTTAAANNAACTCTGTGGAC 177
                      ******  * ** ***     * ** ****** **  **** ** *  *   ** * *  

consensus_2744#0      GTAACCAGTTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAAT 239
consensus_2744#1      GTCCGTNNNTGCTGAAATAACTTGTGAAGCTCACTCATTTCGTCTAAACACAAAACTAAT 237
                      **       ***************************************************

consensus_2744#0      ACATATACTGGAGTGAAAAACTCAGTC-TGATGATTG-TATGTACATCAATCCTCTAAAC 297
consensus_2744#1      ACATATACTGGAGTGAAAAACTCAGTCCTGATGATTGATGTCATCNNNAATCCTCTAAAC 297
                      *************************** ********* * *   *   ************

consensus_2744#0      AGAAAGATCGTAATTATAATTTANAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCT 357
consensus_2744#1      AGAAAGATCGTAATTATAATTTAAAAAAAACTGGAGATGTGTATGATGGGGTAGTTCTCT 357
                      *********************** ************************************

consensus_2744#0      GGATAGATAACGTAATAGTTAAATACATANCACTATAAAATTTAATGAATAGTAATTTTG 417
consensus_2744#1      GGATAGATAAACGTATAGTTAAATACAT-------------------------------- 385
                      **********    **************                                

consensus_2744#0      TGAA 421
consensus_2744#1      ----