cluster # 2751

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Schistosoma mansoni
cluster # 2751 cluster # 2751 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2751#0 length = 577 sequences # 1

consensus_2751#1 length = 241 sequences # 1

consensusID : consensus_2751#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence

                              [TTTAATCCACTGCTATGGTTGTTTAAAGAATCATCCCGAATAGTTAATTCAGGTCGCAGAAACTGAACAACCATAGCCAACTGGTGAGCAGTGAAATTAGGAAAACTAAACTGGCTTGTTTTGCTTTCAGTCATCCCGCTTTCAAAAGCAGCATAAAAATATAGACTAGATTTAGTTAATACATCACGAGGTACTAGAAAACTTTGGTTTTCCGCTATTAGAGTTATCAAGCTACTTGCCATGTTTCAACTCAATATCAATTGATATTGATATGACACAATTATACGTGTGATATGCAACGCGACCAGATGGCTACGAGTGCCTTGAGCAAATCTTCCGATGGAATTTGAGTATCTGAAAGCTTGTTTGGAGCAAGTAATCTGATCAAGAAAAAAATAGCAGTGAGCCGACGACTCAGTAGGTACACATGATGCACATGTGTTTAATTGTCAAAGTAATTTAAAAAGTTACCAGTAGAGTGAAGGTGAGATTAGAAGAATCTGANCATCGAAACTACAGGTTAGCAGAGTAGGCGCCTTACATATTGCACAAACACTTATGAACGNAATTCGCATAC]

[+] EMBL CD186178             [TTTAATCCACTGCTATGGTTGTTTAAAGAATCATCCCGAATAGTTAATTCAGGTCGCAGAAACTGAACAACCATAGCCAACTGGTGAGCAGTGAAATTAGGAAAACTAAACTGGCTTGTTTTGCTTTCAGTCATCCCGCTTTCAAAAGCAGCATAAAAATATAGACTAGATTTAGTTAATACATCACGAGGTACTAGAAAACTTTGGTTTTCCGCTATTAGAGTTATCAAGCTACTTGCCATGTTTCAACTCAATATCAATTGATATTGATATGACACAATTATACGTGTGATATGCAACGCGACCAGATGGCTACGAGTGCCTTGAGCAAATCTTCCGATGGAATTTGAGTATCTGAAAGCTTGTTTGGAGCAAGTAATCTGATCAAGAAAAAAATAGCAGTGAGCCGACGACTCAGTAGGTACACATGATGCACATGTGTTTAATTGTCAAAGTAATTTAAAAAGTTACCAGTAGAGTGAAGGTGAGATTAGAAGAATCTGANCATCGAAACTACAGGTTAGCAGAGTAGGCGCCTTACATATTGCACAAACACTTATGAACGNAATTCGCATAC]




>consensus_2751#0
TTTAATCCACTGCTATGGTTGTTTAAAGAATCATCCCGAATAGTTAATTCAGGTCGCAGA
AACTGAACAACCATAGCCAACTGGTGAGCAGTGAAATTAGGAAAACTAAACTGGCTTGTT
TTGCTTTCAGTCATCCCGCTTTCAAAAGCAGCATAAAAATATAGACTAGATTTAGTTAAT
ACATCACGAGGTACTAGAAAACTTTGGTTTTCCGCTATTAGAGTTATCAAGCTACTTGCC
ATGTTTCAACTCAATATCAATTGATATTGATATGACACAATTATACGTGTGATATGCAAC
GCGACCAGATGGCTACGAGTGCCTTGAGCAAATCTTCCGATGGAATTTGAGTATCTGAAA
GCTTGTTTGGAGCAAGTAATCTGATCAAGAAAAAAATAGCAGTGAGCCGACGACTCAGTA
GGTACACATGATGCACATGTGTTTAATTGTCAAAGTAATTTAAAAAGTTACCAGTAGAGT
GAAGGTGAGATTAGAAGAATCTGANCATCGAAACTACAGGTTAGCAGAGTAGGCGCCTTA
CATATTGCACAAACACTTATGAACGNAATTCGCATAC

consensusID : consensus_2751#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [TTTCGCAAACTCTTTTAATATTACTGAGAATATATCGCAGCTATGTGATTCATGAAGTTGAATGGATTTCGGTTGAAATAACTCGTTCATGATATGAGATATTCTCTGCACACAAGTTTGAATAAGTTTGGGCATTTGAAAGTTATCTGCTGCATCAGCCAAATCCAAAGCTTCTAAAATTTTCAACGTCTCTGGACAAGAATTGTTTAATCCACTGCTATGGTTGTTTAAAGAATCATCC]

[+] EMBL CD093319             [TTTCGCAAACTCTTTTAATATTACTGAGAATATATCGCAGCTATGTGATTCATGAAGTTGAATGGATTTCGGTTGAAATAACTCGTTCATGATATGAGATATTCTCTGCACACAAGTTTGAATAAGTTTGGGCATTTGAAAGTTATCTGCTGCATCAGCCAAATCCAAAGCTTCTAAAATTTTCAACGTCTCTGGACAAGAATTGTTTAATCCACTGCTATGGTTGTTTAAAGAATCATCC]




>consensus_2751#1
TTTCGCAAACTCTTTTAATATTACTGAGAATATATCGCAGCTATGTGATTCATGAAGTTG
AATGGATTTCGGTTGAAATAACTCGTTCATGATATGAGATATTCTCTGCACACAAGTTTG
AATAAGTTTGGGCATTTGAAAGTTATCTGCTGCATCAGCCAAATCCAAAGCTTCTAAAAT
TTTCAACGTCTCTGGACAAGAATTGTTTAATCCACTGCTATGGTTGTTTAAAGAATCATC
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2751#0      TTTAATCCACTGCTATGGTTGTTTAAAGAATCATCCCGAATAGTTAATTCAGGTCGCAGA 60
consensus_2751#1      ------------------------------------------------------------
                                                                                  

consensus_2751#0      AACTGAACAACCATAGCCAACTGGTGAGCAGTGAAATTAGGAAAACTAAACTGGCTTGTT 120
consensus_2751#1      ------------------------------------------------------------
                                                                                  

consensus_2751#0      TTGCTTTCAGTCATCCCGCTTTCAAAAGCAGCATAAAAATATAGACTAGATTTAGTTAAT 180
consensus_2751#1      ------------------------------------------------------------
                                                                                  

consensus_2751#0      ACATCACGAGGTACTAGAAAACTTTGGTTTTCCGCTATTAGAGTTATCAAGCTACTTGCC 240
consensus_2751#1      ------------TTTCGCAAACTCT--TTTAATATTACTGAGAATATATCGCAGCT--AT 44
                                    * * ***** *  ***     ** *     ***   **  **    

consensus_2751#0      ATGTTTCAACTCAATATCAATTGATATTGATATGACACAATTATACGTGTGATATGCAAC 300
consensus_2751#1      GTGATTCA--TGAAGTTGAATGGATTTCGGT-TGAAATAACT-CGTTCATGATATG---- 96
                       ** ****  * **  * *** *** * * * *** * ** *       *******    

consensus_2751#0      GCGACCAGATGGCTACGAGTGCCTTGAGCAAATCTTCCGATGGAATTTGAGTATCTGAAA 360
consensus_2751#1      ------AGATA--------TTCTCTGCACACAAGTTTGAATA-AGTTTGGGCATTTGAAA 141
                            ****         * *  **  ** *  **   **  * **** * ** *****

consensus_2751#0      GCTTGTTTGGAGCAAGTAATCTGATCAAGAAAAAAATAGCAGTGAGCCGACGACTCAGTA 420
consensus_2751#1      G-TTATCTGCTGCAT-CAGCCAAATCCA-AAGCTTCTAAAATTT--TCAACGTCTC--TG 194
                      * ** * **  ***   *  *  *** * **     **  * *    * *** ***  * 

consensus_2751#0      GGTACACATGATGCACATGTGTTTAATTGTCAAAGTAATTTAAAAAGTTACCAGTAGAGT 480
consensus_2751#1      GACAAGAAT------TGTTTAATCCACTGCTATGGTTGTTTAAAGAATCATCC------- 241
                      *  *   **        * *  *  * **  *  **  ****** * * * *        

consensus_2751#0      GAAGGTGAGATTAGAAGAATCTGANCATCGAAACTACAGGTTAGCAGAGTAGGCGCCTTA 540
consensus_2751#1      ------------------------------------------------------------
                                                                                  

consensus_2751#0      CATATTGCACAAACACTTATGAACGNAATTCGCATAC 577
consensus_2751#1      -------------------------------------