cluster # 2754

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Schistosoma mansoni
cluster # 2754 cluster # 2754 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2754#0 length = 435 sequences # 1

consensus_2754#1 length = 398 sequences # 1

consensusID : consensus_2754#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence

                              [AGTATTTTCCTTGGCTCTACATTCAACAAGTTTGCCATGATGCAATTTATTTAAATGTGCCCTCATTGAACTAGTTGCGTCGACTAGTCTTGGTATTTTAGCAGATGCTTCCAGTTGAAATGTTAAATTACCAGAGAAACCAGAAATAAATGATCCAGGTGTACTGTCAGGATTCGATTCTAATTTTACTTGAACACCGTCAATAAACCATGTAAGCAGTGCTCCCGGTTTACCATGACGAGCAATACATTCAAGTACCATAATACTTCCATCATCAACAATTGCAGGTCGTGATGGACCAATATCTATTCGTTGACCTTTACCTTCATTAGTTATTTGAACAAGTTGTGGTGCTTCAGATGGAACTTGTACTGTTAAGACAGCTGTTTGACTTAGATATTGTTGTCGCATAAAATTCACTTGACATACATATGA]

[+] EMBL CD144843             [AGTATTTTCCTTGGCTCTACATTCAACAAGTTTGCCATGATGCAATTTATTTAAATGTGCCCTCATTGAACTAGTTGCGTCGACTAGTCTTGGTATTTTAGCAGATGCTTCCAGTTGAAATGTTAAATTACCAGAGAAACCAGAAATAAATGATCCAGGTGTACTGTCAGGATTCGATTCTAATTTTACTTGAACACCGTCAATAAACCATGTAAGCAGTGCTCCCGGTTTACCATGACGAGCAATACATTCAAGTACCATAATACTTCCATCATCAACAATTGCAGGTCGTGATGGACCAATATCTATTCGTTGACCTTTACCTTCATTAGTTATTTGAACAAGTTGTGGTGCTTCAGATGGAACTTGTACTGTTAAGACAGCTGTTTGACTTAGATATTGTTGTCGCATAAAATTCACTTGACATACATATGA]




>consensus_2754#0
AGTATTTTCCTTGGCTCTACATTCAACAAGTTTGCCATGATGCAATTTATTTAAATGTGC
CCTCATTGAACTAGTTGCGTCGACTAGTCTTGGTATTTTAGCAGATGCTTCCAGTTGAAA
TGTTAAATTACCAGAGAAACCAGAAATAAATGATCCAGGTGTACTGTCAGGATTCGATTC
TAATTTTACTTGAACACCGTCAATAAACCATGTAAGCAGTGCTCCCGGTTTACCATGACG
AGCAATACATTCAAGTACCATAATACTTCCATCATCAACAATTGCAGGTCGTGATGGACC
AATATCTATTCGTTGACCTTTACCTTCATTAGTTATTTGAACAAGTTGTGGTGCTTCAGA
TGGAACTTGTACTGTTAAGACAGCTGTTTGACTTAGATATTGTTGTCGCATAAAATTCAC
TTGACATACATATGA

consensusID : consensus_2754#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [GCATTTCATATCCAGTATTTTCTGCTCTACATTCAACAAGTTTGCCATGATGCAATTTATTTAAATGTGCCCTCATTGAACTAGTTGCGTCGACTCTGGAAAAGAACGGTCGATATCAGGATAAAGTCATTTATTTCAAGTAAAATGGGAAGAAAATATTTTATTGGAGGATATTTTTATGGAACTTAAGACATGATATAGTTATCAGTAAAATTCTTTTCAAATAAGTAGTTTCAAAAATCAAGTAAATTCATGATTTAGATTAAAACTGTATCCAATTATTATTAATTTGCGGTTTGCTTAGGCTAATTTTATCTCGTCCATCCTAAAATTACTTTCCGTCTATCTGTTTTTTATTTTATTCATCTTACTTCCTGGACCGCCCATCAGCACTCTCC]

[+] EMBL CD093342             [GCATTTCATATCCAGTATTTTCTGCTCTACATTCAACAAGTTTGCCATGATGCAATTTATTTAAATGTGCCCTCATTGAACTAGTTGCGTCGACTCTGGAAAAGAACGGTCGATATCAGGATAAAGTCATTTATTTCAAGTAAAATGGGAAGAAAATATTTTATTGGAGGATATTTTTATGGAACTTAAGACATGATATAGTTATCAGTAAAATTCTTTTCAAATAAGTAGTTTCAAAAATCAAGTAAATTCATGATTTAGATTAAAACTGTATCCAATTATTATTAATTTGCGGTTTGCTTAGGCTAATTTTATCTCGTCCATCCTAAAATTACTTTCCGTCTATCTGTTTTTTATTTTATTCATCTTACTTCCTGGACCGCCCATCAGCACTCTCC]




>consensus_2754#1
GCATTTCATATCCAGTATTTTCTGCTCTACATTCAACAAGTTTGCCATGATGCAATTTAT
TTAAATGTGCCCTCATTGAACTAGTTGCGTCGACTCTGGAAAAGAACGGTCGATATCAGG
ATAAAGTCATTTATTTCAAGTAAAATGGGAAGAAAATATTTTATTGGAGGATATTTTTAT
GGAACTTAAGACATGATATAGTTATCAGTAAAATTCTTTTCAAATAAGTAGTTTCAAAAA
TCAAGTAAATTCATGATTTAGATTAAAACTGTATCCAATTATTATTAATTTGCGGTTTGC
TTAGGCTAATTTTATCTCGTCCATCCTAAAATTACTTTCCGTCTATCTGTTTTTTATTTT
ATTCATCTTACTTCCTGGACCGCCCATCAGCACTCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2754#0      -------------AGTATTTTCCTTGGCTCTACATTCAACAAGTTTGCCATGATGCAATT 47
consensus_2754#1      GCATTTCATATCCAGTATTTTCT---GCTCTACATTCAACAAGTTTGCCATGATGCAATT 57
                                   *********    **********************************

consensus_2754#0      TATTTAAATGTGCCCTCATTGAACTAGTTGCGTCGACTAGTCTTGGTATTTTAGCAGATG 107
consensus_2754#1      TATTTAAATGTGCCCTCATTGAACTAGTTGCGTCGACT--CTGGAAAAGAACGGTCGATA 115
                      **************************************         *     *  *** 

consensus_2754#0      CTTCCAGTTGAAATGTTAAATTACCAGAGAAACCAGAAATAAATGATCCA----GGTGTA 163
consensus_2754#1      --TCAGGATAAAGTCATTTATTTCAAGTAAAATGGGAAGAAAATATTTTATTGGAGGATA 173
                        **  * * ** *  *  *** * **  ***   ***  ****  *  *     *  **

consensus_2754#0      CTGTCAGGATTCGATTCTAATTTTACTTGAACACCGTCAATAAACCATGTAAGCA-GTGC 222
consensus_2754#1      TTTTTATGGAAC--TTAAGACATGATATAGTTATCAGTAAAATTCTTTTCAAATAAGTAG 231
                       * * * *   *  **   *  * *  *    * *   ** *  *  *  **  * **  

consensus_2754#0      TCCCGGTTTACCATGACGAGCAATACATTCAAGTACCATAATACTTCCATCATCAACAAT 282
consensus_2754#1      TTTCAAAA-ATCAAGTAAATTCATGATTTAGATTAAAACTGTA-TCCAATTATTATTAAT 289
                      *  *     * ** *   *   **   **  * **  *   ** * * ** ** *  ***

consensus_2754#0      TGCAGGTCGTGATGGACCAATATCTATTCGTTGACCTTTACCTTCATTAGTTATTTGAAC 342
consensus_2754#1      TTGCGGTTTGCTTAGGCTAATTTTATCTCGTCCATCCTAA----AATTACT--TTCCGTC 343
                      *   ***     * * * *** *    ****  * * * *     **** *  **    *

consensus_2754#0      AAGTTGTGGTGCTTCAGATGGAACTTGTACTGTTAAGACAGCTGTTTGACTTAGATATTG 402
consensus_2754#1      TATCTGTTTTTTATTTTATTCATCT--TACTTCCTGGACCGCCCATCAGCACTCTCC--- 398
                       *  ***  *   *   **  * **  ****     *** **   *   *          

consensus_2754#0      TTGTCGCATAAAATTCACTTGACATACATATGA 435
consensus_2754#1      ---------------------------------