cluster # 276

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Schistosoma mansoni
cluster # 276 cluster # 276 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_276#0 length = 411 sequences # 1

consensus_276#1 length = 340 sequences # 1

consensusID : consensus_276#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [CCAATGTGTAGAATGCCAATTTATGAAATTGATTAAAAGGAATGAACTCTCCAACTATTTGAAAAGCAAAAAAAAGACAAAAAAAAGAAAAACTTTTTTTTAAAAAAAAAAGAAGAAAAAACTTGTTGAATTTCATCATAACGGATAACTAAACGAACAAAAGAGAAAGAGATAAGAGAGAGAAAAAAATCAATAATTTTTTTTTAGTATCTGGGTGATATTGTGATATATGTTTTTTTTTCTTGAATAGTAATCATTATTCTATTGACTCTTTATTGATGTGTTTTTTATATTTGTATGTATGTTGTTGTTGTGTGTAGATGATTTATCATGTACATGTTGTAATAGTTCGAGTCCAGATACTTCTATATATGTATTCTTATAAGATGCCCATCTTTAAACAAAGATTAT]

[+] EMBL AI975110             [CCAATGTGTAGAATGCCAATTTATGAAATTGATTAAAAGGAATGAACTCTCCAACTATTTGAAAAGCAAAAAAAAGACAAAAAAAAGAAAAACTTTTTTTTAAAAAAAAAAGAAGAAAAAACTTGTTGAATTTCATCATAACGGATAACTAAACGAACAAAAGAGAAAGAGATAAGAGAGAGAAAAAAATCAATAATTTTTTTTTAGTATCTGGGTGATATTGTGATATATGTTTTTTTTTCTTGAATAGTAATCATTATTCTATTGACTCTTTATTGATGTGTTTTTTATATTTGTATGTATGTTGTTGTTGTGTGTAGATGATTTATCATGTACATGTTGTAATAGTTCGAGTCCAGATACTTCTATATATGTATTCTTATAAGATGCCCATCTTTAAACAAAGATTAT]




>consensus_276#0
CCAATGTGTAGAATGCCAATTTATGAAATTGATTAAAAGGAATGAACTCTCCAACTATTT
GAAAAGCAAAAAAAAGACAAAAAAAAGAAAAACTTTTTTTTAAAAAAAAAAGAAGAAAAA
ACTTGTTGAATTTCATCATAACGGATAACTAAACGAACAAAAGAGAAAGAGATAAGAGAG
AGAAAAAAATCAATAATTTTTTTTTAGTATCTGGGTGATATTGTGATATATGTTTTTTTT
TCTTGAATAGTAATCATTATTCTATTGACTCTTTATTGATGTGTTTTTTATATTTGTATG
TATGTTGTTGTTGTGTGTAGATGATTTATCATGTACATGTTGTAATAGTTCGAGTCCAGA
TACTTCTATATATGTATTCTTATAAGATGCCCATCTTTAAACAAAGATTAT

consensusID : consensus_276#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 340
fasta sequence

                              [TTGAAACAAAAAACCAAAAAAAAAAATTTTTAAAAAAAGAAAAAAAACTTGGAATTCACCAATACGATAACTTAACGACCCAAAACGAAGGTTCAGCGAGAGAAAAAAACCAAAAATTTTTTAGTAACCCGCGAAAATGGCAAAAAGGTTTTTTTCCTGAATAATAATCATATTCTAATGACTCTTTAATTCGAAAGTGGTTTTATATTGTAACTATGTGATTGTTGTGTTAAATAATTTATCATGTACATTTTTAAATAAKTCGAGTCCAGATACTTCTATATATGTACTTCTATATATCGTATTCTTATAAGATCCCCATCTTTAAACAAAGATTACT]

[-] EMBL AI739704             [TTGAAACAAAAAACCAAAAAAAAAAATTTTTAAAAAAAGAAAAAAAACTTGGAATTCACCAATACGATAACTTAACGACCCAAAACGAAGGTTCAGCGAGAGAAAAAAACCAAAAATTTTTTAGTAACCCGCGAAAATGGCAAAAAGGTTTTTTTCCTGAATAATAATCATATTCTAATGACTCTTTAATTCGAAAGTGGTTTTATATTGTAACTATGTGATTGTTGTGTTAAATAATTTATCATGTACATTTTTAAATAAKTCGAGTCCAGATACTTCTATATATGTACTTCTATATATCGTATTCTTATAAGATCCCCATCTTTAAACAAAGATTACT]




>consensus_276#1
TTGAAACAAAAAACCAAAAAAAAAAATTTTTAAAAAAAGAAAAAAAACTTGGAATTCACC
AATACGATAACTTAACGACCCAAAACGAAGGTTCAGCGAGAGAAAAAAACCAAAAATTTT
TTAGTAACCCGCGAAAATGGCAAAAAGGTTTTTTTCCTGAATAATAATCATATTCTAATG
ACTCTTTAATTCGAAAGTGGTTTTATATTGTAACTATGTGATTGTTGTGTTAAATAATTT
ATCATGTACATTTTTAAATAAKTCGAGTCCAGATACTTCTATATATGTACTTCTATATAT
CGTATTCTTATAAGATCCCCATCTTTAAACAAAGATTACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_276#0      CCAATGTGTAGAATGCCAATTTATGAAATTGATTAAAAGGAATGAACTCTCCAACTATTT 60
consensus_276#1      ------------------------------------------------------------
                                                                                 

consensus_276#0      GAAAAGCAAAAAAAAGACAAAAAAAAGAAAAACTTTTTTTTAAAAAAAAAAGAAGAAAAA 120
consensus_276#1      ----TTGAAACAAAAAACCAAAAAAAAAAA------TTTTTAAAAAAAGAA----AAAAA 46
                            *** **** ** ******* ***      ************ **    *****

consensus_276#0      ACTTGTTGAATTTCATCATAACGGATAACTAAACGAACAAAAGAGAAAGAGATAAGAGAG 180
consensus_276#1      ACTT---GGAATTCACCAATACG-ATAACTTAACGACCCAAAACGAAGGT--TCAGCGAG 100
                     ****   * * **** **  *** ****** ***** * ***  *** *   * ** ***

consensus_276#0      AGAAAAAAATCAATAATTTTTTTTTAGTATCTGGGTGATATTGTGATATATGTTTTTTTT 240
consensus_276#1      AGAAAAAAACCAAAAATTTTTT---AGTAACCCGCGAAAATGGCAAAAAG---GTTTTTT 154
                     ********* *** ********   **** *  *   * ** *  * *      ******

consensus_276#0      TCTTGAATAGTAATCATTATTCTATTGACTCTTTA--TTGATGTGTTTTTTATATTTGTA 298
consensus_276#1      TCCTGAATAATAATCAT-ATTCTAATGACTCTTTAATTCGAAAGTGGTTTTATATT-GTA 212
                     ** ****** ******* ****** **********  * **      ********* ***

consensus_276#0      TGTATGTTGTTGTTGTGTGTAGATGATTTATCATGTACATGTTGTAATAGTTCGAGTCCA 358
consensus_276#1      ACTATGTGATTGTTGTGT-TAAATAATTTATCATGTACATTTTTAAATAAKTCGAGTCCA 271
                       *****  ********* ** ** *************** **  ****  *********

consensus_276#0      GATACTTCTATATATGTA---------------TTCTTATAAGATGCCCATCTTTAAACA 403
consensus_276#1      GATACTTCTATATATGTACTTCTATATATCGTATTCTTATAAGATCCCCATCTTTAAACA 331
                     ******************               ************ **************

consensus_276#0      AAGATTAT- 411
consensus_276#1      AAGATTACT 340
                     *******