cluster # 2765

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Schistosoma mansoni
cluster # 2765 cluster # 2765 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2765#0 length = 306 sequences # 1

consensus_2765#1 length = 222 sequences # 1

consensusID : consensus_2765#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence

                              [GATCCCGCACACGCGACATTCGAAGCCAGGACCTACCAATCTCGCACCGGAGCACTTAACCGGTAGACCACTGAGCTGGCATCCAGGTTTTCGATGGTGGTCTAACTTCAACTGACTCAGGATTTCAACTATGAAAATATTAAATTTTCCACAAAACCCCTTCTGATCAATAATATATTTGTAAAATCTCAGCGAATGAATTTGAAGTAAATTCAACGTTTCACCTTGCAATTTGATTCAAGCTTCTTCAAGGATATTTCAAGGATATTATTTGAATAGATAATCAATTAGATGTAATTGAATTAC]

[+] EMBL CD194361             [GATCCCGCACACGCGACATTCGAAGCCAGGACCTACCAATCTCGCACCGGAGCACTTAACCGGTAGACCACTGAGCTGGCATCCAGGTTTTCGATGGTGGTCTAACTTCAACTGACTCAGGATTTCAACTATGAAAATATTAAATTTTCCACAAAACCCCTTCTGATCAATAATATATTTGTAAAATCTCAGCGAATGAATTTGAAGTAAATTCAACGTTTCACCTTGCAATTTGATTCAAGCTTCTTCAAGGATATTTCAAGGATATTATTTGAATAGATAATCAATTAGATGTAATTGAATTAC]




>consensus_2765#0
GATCCCGCACACGCGACATTCGAAGCCAGGACCTACCAATCTCGCACCGGAGCACTTAAC
CGGTAGACCACTGAGCTGGCATCCAGGTTTTCGATGGTGGTCTAACTTCAACTGACTCAG
GATTTCAACTATGAAAATATTAAATTTTCCACAAAACCCCTTCTGATCAATAATATATTT
GTAAAATCTCAGCGAATGAATTTGAAGTAAATTCAACGTTTCACCTTGCAATTTGATTCA
AGCTTCTTCAAGGATATTTCAAGGATATTATTTGAATAGATAATCAATTAGATGTAATTG
AATTAC

consensusID : consensus_2765#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence

                              [AACAATAACAGAGAATAAACTTCTCGTATAAGCTATTATAAAATTAACCGTTTGTTAAAAAAATTGTCTTTGAAATTAAAATTTCATAAACTAATTCTTACAAGACGTCAAATAGAAATAATATATTTGTAAAATCTCAGCGAATGAATTTGAAGTAAATGCAACGTTTCGCCTGGCAATATGGCCCGAGCTTTTTCAAGGAAATATACATTTAGTGTCTTA]

[+] EMBL CD093506             [AACAATAACAGAGAATAAACTTCTCGTATAAGCTATTATAAAATTAACCGTTTGTTAAAAAAATTGTCTTTGAAATTAAAATTTCATAAACTAATTCTTACAAGACGTCAAATAGAAATAATATATTTGTAAAATCTCAGCGAATGAATTTGAAGTAAATGCAACGTTTCGCCTGGCAATATGGCCCGAGCTTTTTCAAGGAAATATACATTTAGTGTCTTA]




>consensus_2765#1
AACAATAACAGAGAATAAACTTCTCGTATAAGCTATTATAAAATTAACCGTTTGTTAAAA
AAATTGTCTTTGAAATTAAAATTTCATAAACTAATTCTTACAAGACGTCAAATAGAAATA
ATATATTTGTAAAATCTCAGCGAATGAATTTGAAGTAAATGCAACGTTTCGCCTGGCAAT
ATGGCCCGAGCTTTTTCAAGGAAATATACATTTAGTGTCTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2765#0      GATCCCGCACACGCGACATTCGAAGCCAGGACCTACCAATCTCGCACCGGAGCACTTAAC 60
consensus_2765#1      --------------------------------------------AACAATAACAGAGAAT 16
                                                                   **   * **   ** 

consensus_2765#0      CGGTAGACCAC-TGAGCTGGCATCCAGGTTTTCGATGGTGGTCTAACTTCAACTGACTCA 119
consensus_2765#1      AAACTTCTCGTATAAGCTATTATAAAATTAACCGTTTGTTAAAAA-----AATTGTCTTT 71
                              *   * ****   **  *  *   ** * **     *     ** ** **  

consensus_2765#0      GGATTTCAACTATGAAAATATTAAATTTTCCACAAAACCCCTTCTGATCAATAATATATT 179
consensus_2765#1      GAAATTAAAATTTCATAA-ACTAATTCTT--ACAAGACGTCAAATAGA-AATAATATATT 127
                      * * ** ** * * * ** * *** * **  **** **  *   *    ***********

consensus_2765#0      TGTAAAATCTCAGCGAATGAATTTGAAGTAAATTCAACGTTTCACCTTGCAATTTGATTC 239
consensus_2765#1      TGTAAAATCTCAGCGAATGAATTTGAAGTAAATGCAACGTTTCGCCTGGCAATATGGCCC 187
                      ********************************* ********* *** ***** **   *

consensus_2765#0      AAGCTTCTTCAAGGATATTTCAAGGATATTATTTGAATAGATAATCAATTAGATGTAATT 299
consensus_2765#1      GAGCTTTTTCAAGGAAATAT-ACATTTAGTGTCTTA------------------------ 222
                       ***** ******** ** * *    ** * * * *                        

consensus_2765#0      GAATTAC 306
consensus_2765#1      -------