cluster # 2771

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Schistosoma mansoni
cluster # 2771 cluster # 2771 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2771#0 length = 624 sequences # 1

consensus_2771#1 length = 495 sequences # 1

consensusID : consensus_2771#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 624
fasta sequence

                              [AAGTTGAAAGAACTCTATCAGCCGTACTGCTCGTTTTGCTTCAAAGATTTACATTGTACTTGTAGTAGACTTTTGTCTCTTTCTTCTGATTCTCATGATTCATGTGATAATGGTTTTCTTAAGAAAACGTGTGATAATAAAAATATCTGCCTGATTTGCTCAGAAAAGCTTACGAAAGGCAATATTTCCAACGATACTTTTTTGCCAAACAACTGTTCACAACAGAACAACAATATTCATTCAGCTGATAAAAATGGTCACCATAGTAACGTTCTTGCTGATGGTCCCAATACAGAACAAATGGAACTCAATTTTAAGTACAACCCTCATACACCCTTTTCTGTGTCTGAGCAGAGTGTCTTTAAGCCACTAACGGATTCTCCTGGTCACTCTAGTACGGTTTCTCTCTCTCAAGGTGTTCGCCGACGTAAACGATTACCAAGTAGCTGGTCTACTATTAGTCGAACACTGATAAATAACGGAGATACGTCAGCGAACGTTACTCATTGTAACATTCATCCTATCCGTAGACATCAAACTGAATTGAAATCGTGTTTATCGGATGGAAATAGCCCACGACACCCCTATATTTCATCTTTGACGACGCCAACTATCATTTCAGGA]

[+] EMBL CD133037             [AAGTTGAAAGAACTCTATCAGCCGTACTGCTCGTTTTGCTTCAAAGATTTACATTGTACTTGTAGTAGACTTTTGTCTCTTTCTTCTGATTCTCATGATTCATGTGATAATGGTTTTCTTAAGAAAACGTGTGATAATAAAAATATCTGCCTGATTTGCTCAGAAAAGCTTACGAAAGGCAATATTTCCAACGATACTTTTTTGCCAAACAACTGTTCACAACAGAACAACAATATTCATTCAGCTGATAAAAATGGTCACCATAGTAACGTTCTTGCTGATGGTCCCAATACAGAACAAATGGAACTCAATTTTAAGTACAACCCTCATACACCCTTTTCTGTGTCTGAGCAGAGTGTCTTTAAGCCACTAACGGATTCTCCTGGTCACTCTAGTACGGTTTCTCTCTCTCAAGGTGTTCGCCGACGTAAACGATTACCAAGTAGCTGGTCTACTATTAGTCGAACACTGATAAATAACGGAGATACGTCAGCGAACGTTACTCATTGTAACATTCATCCTATCCGTAGACATCAAACTGAATTGAAATCGTGTTTATCGGATGGAAATAGCCCACGACACCCCTATATTTCATCTTTGACGACGCCAACTATCATTTCAGGA]




>consensus_2771#0
AAGTTGAAAGAACTCTATCAGCCGTACTGCTCGTTTTGCTTCAAAGATTTACATTGTACT
TGTAGTAGACTTTTGTCTCTTTCTTCTGATTCTCATGATTCATGTGATAATGGTTTTCTT
AAGAAAACGTGTGATAATAAAAATATCTGCCTGATTTGCTCAGAAAAGCTTACGAAAGGC
AATATTTCCAACGATACTTTTTTGCCAAACAACTGTTCACAACAGAACAACAATATTCAT
TCAGCTGATAAAAATGGTCACCATAGTAACGTTCTTGCTGATGGTCCCAATACAGAACAA
ATGGAACTCAATTTTAAGTACAACCCTCATACACCCTTTTCTGTGTCTGAGCAGAGTGTC
TTTAAGCCACTAACGGATTCTCCTGGTCACTCTAGTACGGTTTCTCTCTCTCAAGGTGTT
CGCCGACGTAAACGATTACCAAGTAGCTGGTCTACTATTAGTCGAACACTGATAAATAAC
GGAGATACGTCAGCGAACGTTACTCATTGTAACATTCATCCTATCCGTAGACATCAAACT
GAATTGAAATCGTGTTTATCGGATGGAAATAGCCCACGACACCCCTATATTTCATCTTTG
ACGACGCCAACTATCATTTCAGGA

consensusID : consensus_2771#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence

                              [GTCTTAAATTGAGCAGGATCGTTTGACGGCTTCTGTTTATACTTAAAGACCGCATTCCCCCCAAATGCCTCTGTTAAGCATGTTAACGTACTACCAGATTCACTTGAATGGTTCCCAATATGACATACATTTTCTGACGAATTCATCTGAGAACAGTTACCAAAGCCTTTCACATTATCTGGAACAGACGAAAATTGTTGTTTTTGGTCGATACGGAGAGCCTGAATCACCTCTCTGGAAACATAGTGTTTCCCAGTTTTCGGTTTAGCATAAGTAGGTGCGTCCGCCCAAAGTGGTGTAGCAGAAGGTGATAAGGAAACTAGTGGGGATTTGATACTTCCCTGTTTATTTGTAGCTGGAGAACAAGGGGAACTATGTGAATTGCCTGAGTCCTTATGATAAGGCGTTGTACTTTCACACGTACTGGAAGTATGTTGCCGTGTCCTGGCATACTGGCTTCCTGGAATGATAGTTGGCGTCGTCAAAGATGAAATA]

[+] EMBL CD067093             [GTCTTAAATTGAGCAGGATCGTTTGACGGCTTCTGTTTATACTTAAAGACCGCATTCCCCCCAAATGCCTCTGTTAAGCATGTTAACGTACTACCAGATTCACTTGAATGGTTCCCAATATGACATACATTTTCTGACGAATTCATCTGAGAACAGTTACCAAAGCCTTTCACATTATCTGGAACAGACGAAAATTGTTGTTTTTGGTCGATACGGAGAGCCTGAATCACCTCTCTGGAAACATAGTGTTTCCCAGTTTTCGGTTTAGCATAAGTAGGTGCGTCCGCCCAAAGTGGTGTAGCAGAAGGTGATAAGGAAACTAGTGGGGATTTGATACTTCCCTGTTTATTTGTAGCTGGAGAACAAGGGGAACTATGTGAATTGCCTGAGTCCTTATGATAAGGCGTTGTACTTTCACACGTACTGGAAGTATGTTGCCGTGTCCTGGCATACTGGCTTCCTGGAATGATAGTTGGCGTCGTCAAAGATGAAATA]




>consensus_2771#1
GTCTTAAATTGAGCAGGATCGTTTGACGGCTTCTGTTTATACTTAAAGACCGCATTCCCC
CCAAATGCCTCTGTTAAGCATGTTAACGTACTACCAGATTCACTTGAATGGTTCCCAATA
TGACATACATTTTCTGACGAATTCATCTGAGAACAGTTACCAAAGCCTTTCACATTATCT
GGAACAGACGAAAATTGTTGTTTTTGGTCGATACGGAGAGCCTGAATCACCTCTCTGGAA
ACATAGTGTTTCCCAGTTTTCGGTTTAGCATAAGTAGGTGCGTCCGCCCAAAGTGGTGTA
GCAGAAGGTGATAAGGAAACTAGTGGGGATTTGATACTTCCCTGTTTATTTGTAGCTGGA
GAACAAGGGGAACTATGTGAATTGCCTGAGTCCTTATGATAAGGCGTTGTACTTTCACAC
GTACTGGAAGTATGTTGCCGTGTCCTGGCATACTGGCTTCCTGGAATGATAGTTGGCGTC
GTCAAAGATGAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2771#0      AAGTTGAAAGAACTCTATCAGCCGTACTGCTCGTTTTGCTTCAAAGATTTACATTGTACT 60
consensus_2771#1      -------------------------------------GTCTTAAA---TTGAGCAGGATC 20
                                                           *  * ***   **     * *  

consensus_2771#0      TGTAGTAGACTTTTGTCTCTTTCTTCTGATTCTCATGATTCATGTGATAATGGTTTTCTT 120
consensus_2771#1      GTTTGACGGCTTCTGTTTATACTTAAAGACCGC----ATTCCCCCCA-AATGCCTCTGTT 75
                        * *  * *** *** * *   *   **        ****     * ****  * * **

consensus_2771#0      AAGAAAACGTGTGATAATAAAAATATCTGCCTGATTTGCTCAGAAAAGCTTACGAAAGGC 180
consensus_2771#1      AAGCA------TGTTAACGTA-----CTACCAGATTCACTT-GAATGGTTCCC------- 116
                      *** *      ** ***   *     ** ** ****  **  ***  * *  *       

consensus_2771#0      AATATTTCCAACGATACTTTTTTGCCAAACAACTGTTCACAACAGAACAACAATATTCAT 240
consensus_2771#1      AATAT-------GACATACATTTTCTGACGAATTCATCTGAGAACAGTTACCAAAGCCTT 169
                      *****       ** *    *** *  *  ** *  **  *  * *   ** * *  * *

consensus_2771#0      TCAGCTGATAAAAATGGTCACCATAGTAACGTTCTTGCTGATGGTCCCAATACAGAACAA 300
consensus_2771#1      TCACATTAT----CTGG--AACAGACGAAAATTGTTGTTTTTGGT--CGATACGGAGAGC 221
                      ***  * **     ***  * ** *  **  ** *** *  ****  * **** **    

consensus_2771#0      ATGGAACTCAATTTTAAGTACAACCCTCATACACCCTTTTCTGTGTCTGAGCAGAGTGTC 360
consensus_2771#1      CTGAATCACCTCTCTGGAAACA----TAGTGTTTCCCAGTTTTCGGTTTAGCATA----- 272
                       ** * * *   * *    ***    *  *    **   * *  *  * **** *     

consensus_2771#0      TTTAAGCCACTAACGGATTCTCCTGGTCACTCTAGTACGGTTTCTCTCTCTCAAGGTGTT 420
consensus_2771#1      -----------AGTAGGTGCGTCCGCCCAAAGTGGTGTAG---------CAGAAGGTGAT 312
                                 *   * * *  * *  **   * **   *         *  ****** *

consensus_2771#0      CGCCGACGTAAACGATTACCAAGTAGCTGGTCTACTATTAGTCGAACACTGATAAATAAC 480
consensus_2771#1      -----AAGGAAACTAGTGGGGATTTGATACTTCCCTGTTTATTTGTAGCTGGAGAACAAG 367
                           * * **** * *    * * * *  *   ** **  *      ***   ** ** 

consensus_2771#0      GGAGA-TACGTCAGCGAACGTTACTCATTGTAACATT-CATCCTATCCGTAGACATCAAA 538
consensus_2771#1      GGGAACTATGTGAATTG-CCTGAGTCCTTATGATAAGGCGTTGTACTTTCACACGT---- 422
                      **  * ** ** *     * * * ** ** * * *   * *  **     * ** *    

consensus_2771#0      CTGAATTGAAATCGTGTTTATCGGATGGAAATAGCCCACGACACCCCTATATTTCATCTT 598
consensus_2771#1      ----ACTGGAAGTATGTT-GCCGTGTCC---TGGCATACTGGCTTCCTGGAATG-ATAGT 473
                          * ** **   ****   **  *     * **  **      ***  * *  **  *

consensus_2771#0      TGACGACGCCAACTATCATTTCAGGA 624
consensus_2771#1      TGGCGTCGTCAAAGATGAAATA---- 495
                      ** ** ** ***  ** *  *