These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [AAGTTGAAAGAACTCTATCAGCCGTACTGCTCGTTTTGCTTCAAAGATTTACATTGTACTTGTAGTAGACTTTTGTCTCTTTCTTCTGATTCTCATGATTCATGTGATAATGGTTTTCTTAAGAAAACGTGTGATAATAAAAATATCTGCCTGATTTGCTCAGAAAAGCTTACGAAAGGCAATATTTCCAACGATACTTTTTTGCCAAACAACTGTTCACAACAGAACAACAATATTCATTCAGCTGATAAAAATGGTCACCATAGTAACGTTCTTGCTGATGGTCCCAATACAGAACAAATGGAACTCAATTTTAAGTACAACCCTCATACACCCTTTTCTGTGTCTGAGCAGAGTGTCTTTAAGCCACTAACGGATTCTCCTGGTCACTCTAGTACGGTTTCTCTCTCTCAAGGTGTTCGCCGACGTAAACGATTACCAAGTAGCTGGTCTACTATTAGTCGAACACTGATAAATAACGGAGATACGTCAGCGAACGTTACTCATTGTAACATTCATCCTATCCGTAGACATCAAACTGAATTGAAATCGTGTTTATCGGATGGAAATAGCCCACGACACCCCTATATTTCATCTTTGACGACGCCAACTATCATTTCAGGA] [+] EMBL CD133037 [AAGTTGAAAGAACTCTATCAGCCGTACTGCTCGTTTTGCTTCAAAGATTTACATTGTACTTGTAGTAGACTTTTGTCTCTTTCTTCTGATTCTCATGATTCATGTGATAATGGTTTTCTTAAGAAAACGTGTGATAATAAAAATATCTGCCTGATTTGCTCAGAAAAGCTTACGAAAGGCAATATTTCCAACGATACTTTTTTGCCAAACAACTGTTCACAACAGAACAACAATATTCATTCAGCTGATAAAAATGGTCACCATAGTAACGTTCTTGCTGATGGTCCCAATACAGAACAAATGGAACTCAATTTTAAGTACAACCCTCATACACCCTTTTCTGTGTCTGAGCAGAGTGTCTTTAAGCCACTAACGGATTCTCCTGGTCACTCTAGTACGGTTTCTCTCTCTCAAGGTGTTCGCCGACGTAAACGATTACCAAGTAGCTGGTCTACTATTAGTCGAACACTGATAAATAACGGAGATACGTCAGCGAACGTTACTCATTGTAACATTCATCCTATCCGTAGACATCAAACTGAATTGAAATCGTGTTTATCGGATGGAAATAGCCCACGACACCCCTATATTTCATCTTTGACGACGCCAACTATCATTTCAGGA] consensusID : consensus_2771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [GTCTTAAATTGAGCAGGATCGTTTGACGGCTTCTGTTTATACTTAAAGACCGCATTCCCCCCAAATGCCTCTGTTAAGCATGTTAACGTACTACCAGATTCACTTGAATGGTTCCCAATATGACATACATTTTCTGACGAATTCATCTGAGAACAGTTACCAAAGCCTTTCACATTATCTGGAACAGACGAAAATTGTTGTTTTTGGTCGATACGGAGAGCCTGAATCACCTCTCTGGAAACATAGTGTTTCCCAGTTTTCGGTTTAGCATAAGTAGGTGCGTCCGCCCAAAGTGGTGTAGCAGAAGGTGATAAGGAAACTAGTGGGGATTTGATACTTCCCTGTTTATTTGTAGCTGGAGAACAAGGGGAACTATGTGAATTGCCTGAGTCCTTATGATAAGGCGTTGTACTTTCACACGTACTGGAAGTATGTTGCCGTGTCCTGGCATACTGGCTTCCTGGAATGATAGTTGGCGTCGTCAAAGATGAAATA] [+] EMBL CD067093 [GTCTTAAATTGAGCAGGATCGTTTGACGGCTTCTGTTTATACTTAAAGACCGCATTCCCCCCAAATGCCTCTGTTAAGCATGTTAACGTACTACCAGATTCACTTGAATGGTTCCCAATATGACATACATTTTCTGACGAATTCATCTGAGAACAGTTACCAAAGCCTTTCACATTATCTGGAACAGACGAAAATTGTTGTTTTTGGTCGATACGGAGAGCCTGAATCACCTCTCTGGAAACATAGTGTTTCCCAGTTTTCGGTTTAGCATAAGTAGGTGCGTCCGCCCAAAGTGGTGTAGCAGAAGGTGATAAGGAAACTAGTGGGGATTTGATACTTCCCTGTTTATTTGTAGCTGGAGAACAAGGGGAACTATGTGAATTGCCTGAGTCCTTATGATAAGGCGTTGTACTTTCACACGTACTGGAAGTATGTTGCCGTGTCCTGGCATACTGGCTTCCTGGAATGATAGTTGGCGTCGTCAAAGATGAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2771#0 AAGTTGAAAGAACTCTATCAGCCGTACTGCTCGTTTTGCTTCAAAGATTTACATTGTACT 60 consensus_2771#1 -------------------------------------GTCTTAAA---TTGAGCAGGATC 20 * * *** ** * * consensus_2771#0 TGTAGTAGACTTTTGTCTCTTTCTTCTGATTCTCATGATTCATGTGATAATGGTTTTCTT 120 consensus_2771#1 GTTTGACGGCTTCTGTTTATACTTAAAGACCGC----ATTCCCCCCA-AATGCCTCTGTT 75 * * * *** *** * * * ** **** * **** * * ** consensus_2771#0 AAGAAAACGTGTGATAATAAAAATATCTGCCTGATTTGCTCAGAAAAGCTTACGAAAGGC 180 consensus_2771#1 AAGCA------TGTTAACGTA-----CTACCAGATTCACTT-GAATGGTTCCC------- 116 *** * ** *** * ** ** **** ** *** * * * consensus_2771#0 AATATTTCCAACGATACTTTTTTGCCAAACAACTGTTCACAACAGAACAACAATATTCAT 240 consensus_2771#1 AATAT-------GACATACATTTTCTGACGAATTCATCTGAGAACAGTTACCAAAGCCTT 169 ***** ** * *** * * ** * ** * * * ** * * * * consensus_2771#0 TCAGCTGATAAAAATGGTCACCATAGTAACGTTCTTGCTGATGGTCCCAATACAGAACAA 300 consensus_2771#1 TCACATTAT----CTGG--AACAGACGAAAATTGTTGTTTTTGGT--CGATACGGAGAGC 221 *** * ** *** * ** * ** ** *** * **** * **** ** consensus_2771#0 ATGGAACTCAATTTTAAGTACAACCCTCATACACCCTTTTCTGTGTCTGAGCAGAGTGTC 360 consensus_2771#1 CTGAATCACCTCTCTGGAAACA----TAGTGTTTCCCAGTTTTCGGTTTAGCATA----- 272 ** * * * * * *** * * ** * * * * **** * consensus_2771#0 TTTAAGCCACTAACGGATTCTCCTGGTCACTCTAGTACGGTTTCTCTCTCTCAAGGTGTT 420 consensus_2771#1 -----------AGTAGGTGCGTCCGCCCAAAGTGGTGTAG---------CAGAAGGTGAT 312 * * * * * * ** * ** * * ****** * consensus_2771#0 CGCCGACGTAAACGATTACCAAGTAGCTGGTCTACTATTAGTCGAACACTGATAAATAAC 480 consensus_2771#1 -----AAGGAAACTAGTGGGGATTTGATACTTCCCTGTTTATTTGTAGCTGGAGAACAAG 367 * * **** * * * * * * * ** ** * *** ** ** consensus_2771#0 GGAGA-TACGTCAGCGAACGTTACTCATTGTAACATT-CATCCTATCCGTAGACATCAAA 538 consensus_2771#1 GGGAACTATGTGAATTG-CCTGAGTCCTTATGATAAGGCGTTGTACTTTCACACGT---- 422 ** * ** ** * * * * ** ** * * * * * ** * ** * consensus_2771#0 CTGAATTGAAATCGTGTTTATCGGATGGAAATAGCCCACGACACCCCTATATTTCATCTT 598 consensus_2771#1 ----ACTGGAAGTATGTT-GCCGTGTCC---TGGCATACTGGCTTCCTGGAATG-ATAGT 473 * ** ** **** ** * * ** ** *** * * ** * consensus_2771#0 TGACGACGCCAACTATCATTTCAGGA 624 consensus_2771#1 TGGCGTCGTCAAAGATGAAATA---- 495 ** ** ** *** ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||