cluster # 2809

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Schistosoma mansoni
cluster # 2809 cluster # 2809 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2809#0 length = 644 sequences # 1

consensus_2809#1 length = 522 sequences # 1

consensusID : consensus_2809#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [GTCCGGTACTTTGAATAAGAAAAAGCCTACTACAAGCGCTAAACAATATGTATTATAAACAACCGCAATGATTGGGATGCATTTACCTTGTATTTTTCATGATAATGTAGTAACCACAACTATGGCATTATATTGTAATGTTTTACATTGCTCAATCTACTTTCCCAATGAGTATCATAAAATTCGCAAAATAATCAAAGTATAAAGTACCTTCAAAATCCCAAGTACTGCAACAGGATCGACAGCGTGTACTCTTGAGAAATTTCAAGAGCTATTTCGAAATAGTTGTGATCTCTGGTTTCGAGACTATTATTACTTTATATGATAACAAAAACCACTTACGAACCTGAAATTCAACATCCGAAAGGCTTATCACAGAATAATAATAAAACAAACGAATATTTAACTTTATTTGTTATTGATACATACTTTGAAAACACATAACATTGTTATCATCAGGACTTCCAGCACGCATGTACACAGTAATTTATTTTCTGAGCAACATGTACGTAAAAAAGGTGAAGATTCTATTCAGTTAAATGGTTGAAAATATAAAGAAAGTCAATAGGCGCTTGATTGTTGGATCAAAGAGAAAGTAGCATACTAATAATGGGTATACCCATGATATAGGCANAAAGCGAATA]

[+] EMBL CD094098             [GTCCGGTACTTTGAATAAGAAAAAGCCTACTACAAGCGCTAAACAATATGTATTATAAACAACCGCAATGATTGGGATGCATTTACCTTGTATTTTTCATGATAATGTAGTAACCACAACTATGGCATTATATTGTAATGTTTTACATTGCTCAATCTACTTTCCCAATGAGTATCATAAAATTCGCAAAATAATCAAAGTATAAAGTACCTTCAAAATCCCAAGTACTGCAACAGGATCGACAGCGTGTACTCTTGAGAAATTTCAAGAGCTATTTCGAAATAGTTGTGATCTCTGGTTTCGAGACTATTATTACTTTATATGATAACAAAAACCACTTACGAACCTGAAATTCAACATCCGAAAGGCTTATCACAGAATAATAATAAAACAAACGAATATTTAACTTTATTTGTTATTGATACATACTTTGAAAACACATAACATTGTTATCATCAGGACTTCCAGCACGCATGTACACAGTAATTTATTTTCTGAGCAACATGTACGTAAAAAAGGTGAAGATTCTATTCAGTTAAATGGTTGAAAATATAAAGAAAGTCAATAGGCGCTTGATTGTTGGATCAAAGAGAAAGTAGCATACTAATAATGGGTATACCCATGATATAGGCANAAAGCGAATA]




>consensus_2809#0
GTCCGGTACTTTGAATAAGAAAAAGCCTACTACAAGCGCTAAACAATATGTATTATAAAC
AACCGCAATGATTGGGATGCATTTACCTTGTATTTTTCATGATAATGTAGTAACCACAAC
TATGGCATTATATTGTAATGTTTTACATTGCTCAATCTACTTTCCCAATGAGTATCATAA
AATTCGCAAAATAATCAAAGTATAAAGTACCTTCAAAATCCCAAGTACTGCAACAGGATC
GACAGCGTGTACTCTTGAGAAATTTCAAGAGCTATTTCGAAATAGTTGTGATCTCTGGTT
TCGAGACTATTATTACTTTATATGATAACAAAAACCACTTACGAACCTGAAATTCAACAT
CCGAAAGGCTTATCACAGAATAATAATAAAACAAACGAATATTTAACTTTATTTGTTATT
GATACATACTTTGAAAACACATAACATTGTTATCATCAGGACTTCCAGCACGCATGTACA
CAGTAATTTATTTTCTGAGCAACATGTACGTAAAAAAGGTGAAGATTCTATTCAGTTAAA
TGGTTGAAAATATAAAGAAAGTCAATAGGCGCTTGATTGTTGGATCAAAGAGAAAGTAGC
ATACTAATAATGGGTATACCCATGATATAGGCANAAAGCGAATA

consensusID : consensus_2809#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [CATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAAACGAATATTTAACTTTATTTGTTATTGATACATACTTTGAAAACACATAACATTGTTATCATCAGGACTTCCAGCACGCATGTACACAGTAATTTATTTTCTGAGCAAACATGTACGTAAAAAAGGTGAAAATTCTATTCAGTTAAATGGTTGAAAATATAAAGAAAGTCAATAGGCGCTTGATTGTTGGATCAAAGAGAAGTAGCAATACTAATAATGGTAATACCATGATAATAGGCAAAAAAGCGAATACATGTGATCTAGATAGAGTGTGTAATATTAGGTAATCACGATAAAATAAAGGTAGATATTACACACAATAAATTATCGAAATAGTAAAAATAAAAGGGGGAGAATTAGTGATTCTTCAATATGATCTAAACATTAGGTGGATAAAAACAACAATATGTGAATACATAGGTGTTCAAGGTAGCAAGTAAGTGCATAAAACGCAATACAAGAG]

[+] EMBL BF936772             [CATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAAACGAATATTTAACTTTATTTGTTATTGATACATACTTTGAAAACACATAACATTGTTATCATCAGGACTTCCAGCACGCATGTACACAGTAATTTATTTTCTGAGCAAACATGTACGTAAAAAAGGTGAAAATTCTATTCAGTTAAATGGTTGAAAATATAAAGAAAGTCAATAGGCGCTTGATTGTTGGATCAAAGAGAAGTAGCAATACTAATAATGGTAATACCATGATAATAGGCAAAAAAGCGAATACATGTGATCTAGATAGAGTGTGTAATATTAGGTAATCACGATAAAATAAAGGTAGATATTACACACAATAAATTATCGAAATAGTAAAAATAAAAGGGGGAGAATTAGTGATTCTTCAATATGATCTAAACATTAGGTGGATAAAAACAACAATATGTGAATACATAGGTGTTCAAGGTAGCAAGTAAGTGCATAAAACGCAATACAAGAG]




>consensus_2809#1
CATACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAAA
CGAATATTTAACTTTATTTGTTATTGATACATACTTTGAAAACACATAACATTGTTATCA
TCAGGACTTCCAGCACGCATGTACACAGTAATTTATTTTCTGAGCAAACATGTACGTAAA
AAAGGTGAAAATTCTATTCAGTTAAATGGTTGAAAATATAAAGAAAGTCAATAGGCGCTT
GATTGTTGGATCAAAGAGAAGTAGCAATACTAATAATGGTAATACCATGATAATAGGCAA
AAAAGCGAATACATGTGATCTAGATAGAGTGTGTAATATTAGGTAATCACGATAAAATAA
AGGTAGATATTACACACAATAAATTATCGAAATAGTAAAAATAAAAGGGGGAGAATTAGT
GATTCTTCAATATGATCTAAACATTAGGTGGATAAAAACAACAATATGTGAATACATAGG
TGTTCAAGGTAGCAAGTAAGTGCATAAAACGCAATACAAGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2809#0      GTCCGGTACTTTGAATAAGAAAAAGCCTACTACAAGCGCTAAACAATATGTATTATAAAC 60
consensus_2809#1      ------------------------------------------------------------
                                                                                  

consensus_2809#0      AACCGCAATGATTGGGATGCATTTACCTTGTATTTTTCATGATAATGTAGTAAC----CA 116
consensus_2809#1      -----------------------------------CATACGGTAATGCAGCTGCATGGCA 25
                                                            * * ***** **   *    **

consensus_2809#0      CAACTATGGCATTATATTGTAATGTTTTACATTGCTCAATCTACTTTCCCAATGAGTATC 176
consensus_2809#1      TGTTTTTTTTTTTTTTTTTTTTTTTTTTAAACAAACGAATATTTAACTTTATTTGTTATT 85
                          * *    ** * ** *  * ***** *      *** *        * *   *** 

consensus_2809#0      ATAAAATTCGCAAAATAATCAAAGTATAAAGTACCTTCAAAATCCCAAGTACTGCAACAG 236
consensus_2809#1      GATACATACTTTGAAAACACATAACATTGT-TATCATCAGGACTTCCAGCAC-GCA-TGT 142
                         * ** *    ** *  ** *  **    ** * ***  *   * ** ** ***    

consensus_2809#0      GATCGACAGCGTGTACTCTTGAGAAATTTCAAGAGCTATTTCGAAATAGTTGTGATCTCT 296
consensus_2809#1      ACACAGTAATTTATTTTCTGAGCAAACAT------GTACGTAAAAAAGGTGAAAATTCTA 196
                         *   *   * *  ***    ***  *       **  *  ***  **    **    

consensus_2809#0      GGTTTCGAGACTATTATTACTTTATATGATAACAAAAACCACTTACGAACCTGAA-ATTC 355
consensus_2809#1      TTCAGTTAAATGGTTGAAAATATAAAGAAAGTCAATAGGCGCTTGATTGTTGGATCAAAG 256
                             * *   **   * * ** *  *   *** *  * ***        **  *   

consensus_2809#0      AACATCCGAAAGGCTTATCACAG-AATAATAATAAAACAAACGAATATTTAACTTTATTT 414
consensus_2809#1      AGAAGTAGCAATACTAATAATGGTAATACCATGATAATAGGCAAAAAAGCGAATACATGT 316
                      *  *   * **  ** ** *  * ****  *  * ** *  * ** *    * *  ** *

consensus_2809#0      GTTATTGATACATACTTTGAAAACACATAACATTGTTATCATCAGGACTTCCAGCACGCA 474
consensus_2809#1      GATCTAGATAGAGTGTGTAATATTAGGTAATCACGATAAAATAAAGGTAGATATTACACA 376
                      * * * **** *   * * * *  *  ***    * **  ** * *      *  ** **

consensus_2809#0      TGTACACAGTAATTTATTTTCTGAGCAACATGTACGTAAAAAAGGTGAAGATTCTATTCA 534
consensus_2809#1      CA-ATA-AATTATCGAAATAGTAAAAATAAAAGGGGGAGAATTAGTGATTCTTCAATATG 434
                         * * * * **  *  *  * *  *  *     * * **   ****   *** **   

consensus_2809#0      GTTAAATGGTTGAAAATATAAAGAAAGTCAATAGGCGCTTGATTGTTGGATCAAAG-AGA 593
consensus_2809#1      ATCTAAACATTAGGTGGATAAAAACAA-CAATATGTGAATACATAGGTGTTCAAGGTAGC 493
                       *  **   **      ***** * *  ***** * *  *   *    * **** * ** 

consensus_2809#0      AAGTAGCATACTAATAATGGGTATACCCATGATATAGGCANAAAGCGAATA 644
consensus_2809#1      AAGTAA-GTGCATAAAACGCA-ATACAAGAG-------------------- 522
                      *****   * *  * ** *   ****    *