cluster # 2822

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Schistosoma mansoni
cluster # 2822 cluster # 2822 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2822#0 length = 441 sequences # 1

consensus_2822#1 length = 384 sequences # 1

consensusID : consensus_2822#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [ACTTCTACATAATGATGCTGTTTGCAATAAAACAACCAGTCGAACTTTCGGACATTAAGCAGGGTTAGTCGGATTGTTAAATTTAAATATCAAACTCATAAACTTAGATTAGCACAATAGGCAGGCACAGAAAAGTGTGAAATTTTAATTCCCATTAAGCCATAAATTAGACCGTTGTAACCAACTTATAATATAGTGCCGTTGAAAAGTGTGGACTTAATTTCGTCAAGTTAAAAACTGCTAAATCCAGACTCACCTACGTTTCTGCCACATCTGTTCAATCGCATCGGCCAATTCACTGTTAGAAAGCTCATGATCATCCTGAAACTTAAGGAAACCTTCACCACCATGGCCTGAGGCGGGAATTAAATTTTTTAGGTAATACCTGTCATATATATTAGGATATTACTGTGCTCGTCAGTATTGAGGCGCTTAGAAGTA]

[+] EMBL CD094360             [ACTTCTACATAATGATGCTGTTTGCAATAAAACAACCAGTCGAACTTTCGGACATTAAGCAGGGTTAGTCGGATTGTTAAATTTAAATATCAAACTCATAAACTTAGATTAGCACAATAGGCAGGCACAGAAAAGTGTGAAATTTTAATTCCCATTAAGCCATAAATTAGACCGTTGTAACCAACTTATAATATAGTGCCGTTGAAAAGTGTGGACTTAATTTCGTCAAGTTAAAAACTGCTAAATCCAGACTCACCTACGTTTCTGCCACATCTGTTCAATCGCATCGGCCAATTCACTGTTAGAAAGCTCATGATCATCCTGAAACTTAAGGAAACCTTCACCACCATGGCCTGAGGCGGGAATTAAATTTTTTAGGTAATACCTGTCATATATATTAGGATATTACTGTGCTCGTCAGTATTGAGGCGCTTAGAAGTA]




>consensus_2822#0
ACTTCTACATAATGATGCTGTTTGCAATAAAACAACCAGTCGAACTTTCGGACATTAAGC
AGGGTTAGTCGGATTGTTAAATTTAAATATCAAACTCATAAACTTAGATTAGCACAATAG
GCAGGCACAGAAAAGTGTGAAATTTTAATTCCCATTAAGCCATAAATTAGACCGTTGTAA
CCAACTTATAATATAGTGCCGTTGAAAAGTGTGGACTTAATTTCGTCAAGTTAAAAACTG
CTAAATCCAGACTCACCTACGTTTCTGCCACATCTGTTCAATCGCATCGGCCAATTCACT
GTTAGAAAGCTCATGATCATCCTGAAACTTAAGGAAACCTTCACCACCATGGCCTGAGGC
GGGAATTAAATTTTTTAGGTAATACCTGTCATATATATTAGGATATTACTGTGCTCGTCA
GTATTGAGGCGCTTAGAAGTA

consensusID : consensus_2822#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [TACCAAAAAAGTCTGTAACAAGTACGTGACGTATATCACGTCTAAATAAATCAGATCGAGTGATAACAGTTGACTGACATAATGAGAAAGGGCATAATTGGGAGAAATCATACAATGTTCTTTTGCTTGAAGGAGTAACAGACTCCAAAAACTGAAACGCATAATAAGAATATCGATCAGAAACATAGGTTCCGATTTCACGATCCGAATGGAGAGATAATGATTCTTCACCTATAGCGCTGCTACCGATGGCTACTACATTTGGCGAATAAAACAACTTGCCCATTGATTCAGCTTGACATGTATCGACAATGAATAGTAATTCATGATACCTACGTTTCTGCCACATCTGTTCAATCGCATCGGCCAATTCACTGTTAGAAA]

[+] EMBL CD137830             [TACCAAAAAAGTCTGTAACAAGTACGTGACGTATATCACGTCTAAATAAATCAGATCGAGTGATAACAGTTGACTGACATAATGAGAAAGGGCATAATTGGGAGAAATCATACAATGTTCTTTTGCTTGAAGGAGTAACAGACTCCAAAAACTGAAACGCATAATAAGAATATCGATCAGAAACATAGGTTCCGATTTCACGATCCGAATGGAGAGATAATGATTCTTCACCTATAGCGCTGCTACCGATGGCTACTACATTTGGCGAATAAAACAACTTGCCCATTGATTCAGCTTGACATGTATCGACAATGAATAGTAATTCATGATACCTACGTTTCTGCCACATCTGTTCAATCGCATCGGCCAATTCACTGTTAGAAA]




>consensus_2822#1
TACCAAAAAAGTCTGTAACAAGTACGTGACGTATATCACGTCTAAATAAATCAGATCGAG
TGATAACAGTTGACTGACATAATGAGAAAGGGCATAATTGGGAGAAATCATACAATGTTC
TTTTGCTTGAAGGAGTAACAGACTCCAAAAACTGAAACGCATAATAAGAATATCGATCAG
AAACATAGGTTCCGATTTCACGATCCGAATGGAGAGATAATGATTCTTCACCTATAGCGC
TGCTACCGATGGCTACTACATTTGGCGAATAAAACAACTTGCCCATTGATTCAGCTTGAC
ATGTATCGACAATGAATAGTAATTCATGATACCTACGTTTCTGCCACATCTGTTCAATCG
CATCGGCCAATTCACTGTTAGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2822#0      ACTTCTACATAATGATGCTGTTTGCAATAAAACAACCAGTCGAACTTTCGGACATTAAGC 60
consensus_2822#1      ---------TACCAAAAAAGTCTGTAACAAGT--ACGTGACGTATATCACGTC--TAAAT 47
                               **   *    ** ** ** **    **  * ** *  *   * *  ***  

consensus_2822#0      AGGGTTAGTCGGATTGTTAAATTTAAATATCAAACTCATAAACTTAGATTAGCACAATAG 120
consensus_2822#1      AAATCAGATCGAGTGATAACAGTTGACTGACATAATGAGAAAG-------GGCATAATTG 100
                      *       ***  *  * * * ** * *  ** * * * ***         *** *** *

consensus_2822#0      GCAGGCACAGAAAAGTGTGAAATTTTAATTCCCATTAAGCCATAAATTAGACCGTTGTAA 180
consensus_2822#1      GGAG-------AAATCATACAATGTTCTTTTGCTTGAAGGAGTAA--CAGACTCCAAAAA 151
                      * **       ***   *  *** **  **  * * ***   ***   ****      **

consensus_2822#0      CC--AACTTATAATAT-AGTGCCGTTGAAAAGTGTGGACTTAATTTCGTCAAGTTAAAAA 237
consensus_2822#1      CTGAAACGCATAATAAGAATATCGATCAGAAACATAGGTTCCGATTTCACGATCCGAATG 211
                      *   ***  ******  * *  ** * * **   * *  *    **   * *    **  

consensus_2822#0      CTGCTAAATCCAGACT-CACCTACGTTTCTGCCACATCTGTTCAATCGCATCGGCCAATT 296
consensus_2822#1      GAGAGATAATGATTCTTCACCTATAGCGCTGCTACCGATGGCTACTACATTTGGCGAAT- 270
                        *  * *   *  ** ******     **** **   **   * *    * *** *** 

consensus_2822#0      CACTGTTAGAAAGCTCATGATCATCCTGAAACTTAAGGAAACCTTCACCACCATGGCCTG 356
consensus_2822#1      --------AAAACAACTTGCCCATT----GATTCAGCTTGACATGTATCGACAA----TG 314
                               ***   * **  ***      * * *     ** *  * *  **     **

consensus_2822#0      AGGCGGGAATTAAATTTTTTAGGTAATACCTGTCATATATATTAGGATATTACTGTGCTC 416
consensus_2822#1      AATAGTAATTCATGATACCTACGTT---TCTGCCACATCTGTTCA-ATCGCATCGGCCAA 370
                      *   *  * * *   *   ** **     *** ** ** * **   **   *  *  *  

consensus_2822#0      GTCAGTATTGAGGCGCTTAGAAGTA 441
consensus_2822#1      TTCACTGTTAGAAA----------- 384
                       *** * **