These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [GTTTTCTAATCAGTTTTATGTTAGCCAATAATTTTTTGGCAGAGATGCTATTAATGTTGATATTGCTTTTGTGATTTTCGCATGCGTTTGAGCTACGCTATAATCTGCAGTATTCGTTTACAAAAATGCTGTATTTTCAATTTTTTTCCAGGCTTCTAGTTTTGATCCAAATAGTGTTGATTTGTACACAGGAGTAAGTTAAGTTACTGTACTGAAAATTTATTTACTTATGATTATAATGTTATATACTTTCACATAAGTAAGTATAAGGGAATTTTAATAGTTTATACTCGATTTTCAACTATATGATCGAAGACGAGCATTTAATAACCAAACGTATCCAATTAACAAGTCACATTTTGTAAGAAGCACGTATTCCTTATTCTATTACTAACCACTAAACCTAAATATAATTATTGAGTTGTTTAAAAAATTTTCATATAGTCATTTTTGGGGAACTAGGTAGGCATGATTGATACTTANGACTATAGTATAATTCCGTGTATGAGCTTGTATTTACTGAATTGCTTTGGATTATGTTATG] [+] EMBL CD095278 [GTTTTCTAATCAGTTTTATGTTAGCCAATAATTTTTTGGCAGAGATGCTATTAATGTTGATATTGCTTTTGTGATTTTCGCATGCGTTTGAGCTACGCTATAATCTGCAGTATTCGTTTACAAAAATGCTGTATTTTCAATTTTTTTCCAGGCTTCTAGTTTTGATCCAAATAGTGTTGATTTGTACACAGGAGTAAGTTAAGTTACTGTACTGAAAATTTATTTACTTATGATTATAATGTTATATACTTTCACATAAGTAAGTATAAGGGAATTTTAATAGTTTATACTCGATTTTCAACTATATGATCGAAGACGAGCATTTAATAACCAAACGTATCCAATTAACAAGTCACATTTTGTAAGAAGCACGTATTCCTTATTCTATTACTAACCACTAAACCTAAATATAATTATTGAGTTGTTTAAAAAATTTTCATATAGTCATTTTTGGGGAACTAGGTAGGCATGATTGATACTTANGACTATAGTATAATTCCGTGTATGAGCTTGTATTTACTGAATTGCTTTGGATTATGTTATG] consensusID : consensus_2848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [AACTTTAAATGACATACTTCACCTTAGATTTGGTCATCTTTTTGGATGATTAATTCGTATATATATAATTGCGGAACCTGCAGAAGACTTATTGAAAACAATATTCTTCGTTCATATATTAGTGTTTTAATATGATAGGGATTTTTAAACATTTAAGTGAGAATAATAAATCAGTTTACGAAGTCAGTTTCTGGACACAATAAAAGCGATTAATTTTGTTTACTCAACACACATTACGGAACTGATGGTATAGAAAGTTTAAAAAGATAAATTGTCTCAATCGAATTATTCAATGAATAGAAAGTTTAATCAAATATAGGACTTTTCATAACATAATCCAAAGCAATTCAGTAAATACAAGCTCATACACGGAATTATACTTATAGTCTAAGTATCAATCATGCCTACCTAGTTCCCCAAAGAGTGGCGGNCNNNNTNTNTG] [+] EMBL CD155881 [AACTTTAAATGACATACTTCACCTTAGATTTGGTCATCTTTTTGGATGATTAATTCGTATATATATAATTGCGGAACCTGCAGAAGACTTATTGAAAACAATATTCTTCGTTCATATATTAGTGTTTTAATATGATAGGGATTTTTAAACATTTAAGTGAGAATAATAAATCAGTTTACGAAGTCAGTTTCTGGACACAATAAAAGCGATTAATTTTGTTTACTCAACACACATTACGGAACTGATGGTATAGAAAGTTTAAAAAGATAAATTGTCTCAATCGAATTATTCAATGAATAGAAAGTTTAATCAAATATAGGACTTTTCATAACATAATCCAAAGCAATTCAGTAAATACAAGCTCATACACGGAATTATACTTATAGTCTAAGTATCAATCATGCCTACCTAGTTCCCCAAAGAGTGGCGGNCNNNNTNTNTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2848#0 GTTTTCTAATCAGTTTTATGTTAGCCAATAATTTTT--TGGCAGAGATGCTATTAATGTT 58 consensus_2848#1 -----------------------------AACTTTAAATGACATACTTCACCTTAGATTT 31 ** *** ** ** * * *** ** consensus_2848#0 GATATTGCTTTTGTGATTTTCGCATGCGTTTGAGCTACGCTATAATCTGCAGTATTCGTT 118 consensus_2848#1 GGTCATCTTTTTGGATGATTAATTCGTATATATATAATTGCGGAACCTGCAGAAGACTTA 91 * * * ***** ** * * * * ** ****** * * * consensus_2848#0 TACAAAAATGCTGTATTTTCAATTTTTTTCCAGGCTTCTAGTTTTGATCCAAATAGTGTT 178 consensus_2848#1 TTGAAAA---CAATATTCTTCGTTCATATATTAGTGTTTTAATATGATAGGGATT-TTTA 147 * **** * **** * ** * * * * * * **** ** * * consensus_2848#0 GATTTGTACACAGGAGTAAGTTAAGTTACTGTACTGAAAATTTATTTACTTATGATTATA 238 consensus_2848#1 AACATTTAAGTGAGAATAA--TAAATCAGTTTACGAAGTCAGTTTCTGGACACAATAAAA 205 * * ** ** *** *** * * * *** * * * * * ** * * consensus_2848#0 ATGTTATATACTTTCACATAAGTAAGTATAAGGGAATTTTAATAGTTTATACTCGATTTT 298 consensus_2848#1 GCGATTAATTTTGTTTACTCAACACACATTACGGAACT--GATGGTATAGAAAGTTTAAA 263 * * ** * * * * * ** * **** * ** ** ** * * consensus_2848#0 CAACTATATGATCGAAGACGAGC-ATTTAATAACCAAACGTATCCAATTAACAAGTCACA 357 consensus_2848#1 AAGATAAATTGTCTCAATCGAATTATTCAATGAATAGAAAGTTTAATCAAATATAGGACT 323 * ** ** ** * *** *** *** * * * * * ** * ** consensus_2848#0 TTTTGTAAGA-AGCACGTATTCCTTATTCTATTACTAACCACTAAACCTAAATATAATTA 416 consensus_2848#1 TTTCATAACATAATCCAAAGCAATTCAGTAAATACAAGCTCATACACGGAATTATACTTA 383 *** *** * * * * ** * *** * * ** ** ** **** *** consensus_2848#0 TTGAGTT-GTTTAAAAAATTTTCATATAGTCATTTTTGGGGAACTAGGTAGGCATGATTG 475 consensus_2848#1 TAGTCTAAGTATCAATCATGCCTACCTAGT--TCCCCAAAGAGT--GGCGGNCNNNNTNT 439 * * * ** * ** ** * **** * ** ** * * * consensus_2848#0 ATACTTANGACTATAGTATAATTCCGTGTATGAGCTTGTATTTACTGAATTGCTTTGGAT 535 consensus_2848#1 NTG--------------------------------------------------------- 442 * consensus_2848#0 TATGTTATG 544 consensus_2848#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||