cluster # 2849

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Schistosoma mansoni
cluster # 2849 cluster # 2849 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2849#0 length = 502 sequences # 1

consensus_2849#1 length = 204 sequences # 1

consensusID : consensus_2849#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence

                              [TAGTAGATGAATTTCGTCAAAAATAATTAATCTAACCAACTGTATATAAGCTCGCTCATCTCCACCACGACGTGTAATTACATCCCATTTTTCTGGTGTGCATACGATAACTTGCGTTTCATAAATTTGTTCACGACTAAGTTGGTGATCACCAGTAAGTTCATCAACTTTAATACCATAACTGCTTAACAGCTTATTAAAATTACCGACAACTTCTTGTACCAAAGATCGCATAGGTGCAATATAAATAAGTTTGAATTCATCTTTATTTATGGTACCATCAGGATTAATAAATTTGCCAAGTTCGTGCATAATACATAATAAAGCTACGTTTGTTTTACCAGCACCAGTAGGAGCACATAGCAGCAGATTTTCATCCGTTTCCATTGCAGCATGGTATAAACGACTTTGGATTAAGTTGAGAGTTTTGCAACCTTCAAAGGCAGCTTGTGCATATGCAGGTAGTTTTTCAATTTTTATTAGAGTTTCGCCTGGTTCTAAT]

[+] EMBL CD095323             [TAGTAGATGAATTTCGTCAAAAATAATTAATCTAACCAACTGTATATAAGCTCGCTCATCTCCACCACGACGTGTAATTACATCCCATTTTTCTGGTGTGCATACGATAACTTGCGTTTCATAAATTTGTTCACGACTAAGTTGGTGATCACCAGTAAGTTCATCAACTTTAATACCATAACTGCTTAACAGCTTATTAAAATTACCGACAACTTCTTGTACCAAAGATCGCATAGGTGCAATATAAATAAGTTTGAATTCATCTTTATTTATGGTACCATCAGGATTAATAAATTTGCCAAGTTCGTGCATAATACATAATAAAGCTACGTTTGTTTTACCAGCACCAGTAGGAGCACATAGCAGCAGATTTTCATCCGTTTCCATTGCAGCATGGTATAAACGACTTTGGATTAAGTTGAGAGTTTTGCAACCTTCAAAGGCAGCTTGTGCATATGCAGGTAGTTTTTCAATTTTTATTAGAGTTTCGCCTGGTTCTAAT]




>consensus_2849#0
TAGTAGATGAATTTCGTCAAAAATAATTAATCTAACCAACTGTATATAAGCTCGCTCATC
TCCACCACGACGTGTAATTACATCCCATTTTTCTGGTGTGCATACGATAACTTGCGTTTC
ATAAATTTGTTCACGACTAAGTTGGTGATCACCAGTAAGTTCATCAACTTTAATACCATA
ACTGCTTAACAGCTTATTAAAATTACCGACAACTTCTTGTACCAAAGATCGCATAGGTGC
AATATAAATAAGTTTGAATTCATCTTTATTTATGGTACCATCAGGATTAATAAATTTGCC
AAGTTCGTGCATAATACATAATAAAGCTACGTTTGTTTTACCAGCACCAGTAGGAGCACA
TAGCAGCAGATTTTCATCCGTTTCCATTGCAGCATGGTATAAACGACTTTGGATTAAGTT
GAGAGTTTTGCAACCTTCAAAGGCAGCTTGTGCATATGCAGGTAGTTTTTCAATTTTTAT
TAGAGTTTCGCCTGGTTCTAAT

consensusID : consensus_2849#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence

                              [CATCCAACGACGGCAGTGGCGGCGGAGAAAAATGGGATGTAATTACACGTCGTGGTGGAGATGAGCGAGCTTATATACAGTTGGTTAGATTAATTATTTTTGACGAAATTCATCTACTACACGATGATCGTGGTCCAATACTGGAAGCTATTGTTGCACGAACTTTACGTGCTGTAGAGAGTACATCCGGTCTAGCTGTTTCTA]

[+] EMBL CD130412             [CATCCAACGACGGCAGTGGCGGCGGAGAAAAATGGGATGTAATTACACGTCGTGGTGGAGATGAGCGAGCTTATATACAGTTGGTTAGATTAATTATTTTTGACGAAATTCATCTACTACACGATGATCGTGGTCCAATACTGGAAGCTATTGTTGCACGAACTTTACGTGCTGTAGAGAGTACATCCGGTCTAGCTGTTTCTA]




>consensus_2849#1
CATCCAACGACGGCAGTGGCGGCGGAGAAAAATGGGATGTAATTACACGTCGTGGTGGAG
ATGAGCGAGCTTATATACAGTTGGTTAGATTAATTATTTTTGACGAAATTCATCTACTAC
ACGATGATCGTGGTCCAATACTGGAAGCTATTGTTGCACGAACTTTACGTGCTGTAGAGA
GTACATCCGGTCTAGCTGTTTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2849#0      TAGTAGATGAATTTCGTCAAAAATAATTAATCTAACCAACTGTATATAAGCTCGCTCATC 60
consensus_2849#1      ------------------------------------------------------------
                                                                                  

consensus_2849#0      TCCACCACGACGTGTAATTACATCCCATTTTTCTGGTGTGCATACGATAACTTGCGTTTC 120
consensus_2849#1      ------------------------------------------------------------
                                                                                  

consensus_2849#0      ATAAATTTGTTCACGACTAAGTTGGTGATCACCAGTAAGTTCATCAACTTTAATACCATA 180
consensus_2849#1      ------------------------------------------------------------
                                                                                  

consensus_2849#0      ACTGCTTAACAGCTTATTAAAATTACCGACAACTTCTTGTACCAAAGATCGCATAGGTGC 240
consensus_2849#1      -----------------------------------CATCCAACGACGGCAGTGGCGGCG- 24
                                                         * *  * * * *   *    ** * 

consensus_2849#0      AATATAAATAAGTTTGAATTCATCTTTATTTATGGTACCATCAGGATTA-ATAAATTTGC 299
consensus_2849#1      GAGAAAAATGGGATGTAATTACACGTCGTGGTGGAGATGAGCGAGCTTATATACAGTTGG 84
                       * * ****  * *  ****   * *  *    *  *  * *  * *** *** * *** 

consensus_2849#0      CAAGTTCGTGCATAATACATAATAAAGCTACGTTTGTTTTACCAGCACCAGTAGGAGCAC 359
consensus_2849#1      TTAGATTA---ATTATTTTTGACGAAATT-CATCTACTACACGATGATCG---TGGTCCA 137
                        ** *     ** **   * *  **  * * * *  *  ** *  * *     *  *  

consensus_2849#0      ATAGCAGCAGATTTTCATCCGTTTCCATTGCAGCATGGTATAAACGACTTTGGATTAAGT 419
consensus_2849#1      ATACTGGAAGCTATTGTTGCACGAACTTTAC-GTGCTGTAGAGAGTACATCCGGTCTAGC 196
                      ***   * ** * **  * *     * ** * *    *** * *  ** *  * *  ** 

consensus_2849#0      TGAGAGTTTTGCAACCTTCAAAGGCAGCTTGTGCATATGCAGGTAGTTTTTCAATTTTTA 479
consensus_2849#1      TGT---TTCTA------------------------------------------------- 204
                      **    ** *                                                  

consensus_2849#0      TTAGAGTTTCGCCTGGTTCTAAT 502
consensus_2849#1      -----------------------