cluster # 285

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Schistosoma mansoni
cluster # 285 cluster # 285 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_285#0 length = 501 sequences # 1

consensus_285#1 length = 430 sequences # 1

consensusID : consensus_285#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [TATACCAGTTCGTTCTCAAAGAAGCTGTACAGACTTCTCCTACCATTGGAAGCAATGTTGAGGAAGTAAAGTGGAAGAACCTACATTTCGTAATGTGGGATATTGGTGGACAGACTTCTGTTAGGGCTTCTTGGACCACATACTTTGCAGGCTCAGACTTTGTCATTTTAGTGGTTGATAGTACAGATCGGGAACGTTTATACCTGACTAAACAGGAGCTGTGTAAGCTACTAGTTGCTGAGGAGTTGAAACGTTCGAAAATGCTAATTTTTGCCAACAAACAAGATGTTTCTGGCTGGACCACCCGTGGCATGTACAGCCTTGTTGCGCACTCACAGGAGAAGGGCTTCCTCAAGGTTTGGATTGGATTGCTACTCANATTGGGCGATAACAGTGAAGGTTTTTACTATTCTTATCTTCATTTGCAATATAAGTTTCTGTAATTAGTTAGCGTAGCCAAGGAAGTAATATTCAAGCTACGTATATCACCGATGTGAGCCC]

[+] EMBL CD156984             [TATACCAGTTCGTTCTCAAAGAAGCTGTACAGACTTCTCCTACCATTGGAAGCAATGTTGAGGAAGTAAAGTGGAAGAACCTACATTTCGTAATGTGGGATATTGGTGGACAGACTTCTGTTAGGGCTTCTTGGACCACATACTTTGCAGGCTCAGACTTTGTCATTTTAGTGGTTGATAGTACAGATCGGGAACGTTTATACCTGACTAAACAGGAGCTGTGTAAGCTACTAGTTGCTGAGGAGTTGAAACGTTCGAAAATGCTAATTTTTGCCAACAAACAAGATGTTTCTGGCTGGACCACCCGTGGCATGTACAGCCTTGTTGCGCACTCACAGGAGAAGGGCTTCCTCAAGGTTTGGATTGGATTGCTACTCANATTGGGCGATAACAGTGAAGGTTTTTACTATTCTTATCTTCATTTGCAATATAAGTTTCTGTAATTAGTTAGCGTAGCCAAGGAAGTAATATTCAAGCTACGTATATCACCGATGTGAGCCC]




>consensus_285#0
TATACCAGTTCGTTCTCAAAGAAGCTGTACAGACTTCTCCTACCATTGGAAGCAATGTTG
AGGAAGTAAAGTGGAAGAACCTACATTTCGTAATGTGGGATATTGGTGGACAGACTTCTG
TTAGGGCTTCTTGGACCACATACTTTGCAGGCTCAGACTTTGTCATTTTAGTGGTTGATA
GTACAGATCGGGAACGTTTATACCTGACTAAACAGGAGCTGTGTAAGCTACTAGTTGCTG
AGGAGTTGAAACGTTCGAAAATGCTAATTTTTGCCAACAAACAAGATGTTTCTGGCTGGA
CCACCCGTGGCATGTACAGCCTTGTTGCGCACTCACAGGAGAAGGGCTTCCTCAAGGTTT
GGATTGGATTGCTACTCANATTGGGCGATAACAGTGAAGGTTTTTACTATTCTTATCTTC
ATTTGCAATATAAGTTTCTGTAATTAGTTAGCGTAGCCAAGGAAGTAATATTCAAGCTAC
GTATATCACCGATGTGAGCCC

consensusID : consensus_285#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [TGCTAATTTTTGCCAACAAACAAGATGTTTCTGGCTGTATGTCTGTTGCTGAAATCAGTCACAATCTAAACCTTACGTCTATTAGGGACCACCCGTGGCATGTACAGCCTTGTTGCGCACTCACAGGAGAAGGGCTTCCTCAAGGTTTGGATTGGATTGCAACTCAAATTGGGCGATAACAGTGAAGGTTTTTACTATTCTTATCTTCATTTGCAATATAAGCTTCTGTAATTAGTTAGCGTAGCCAAGGAAGTAATATTCAAGCTACGTTTATCACCGATGTGAGCTCTTTTGCAGTTGTCGGTGTTTTCATGGTAGTTAGTATTGGAAATATTGTTATTTTGATCCACCTACGTTTTTCTGTCAACTTTGATGATTAATTAACTATATCTATCCTATTTTCTGTANATCGTCATGTCTCAACCCCTTC]

[+] EMBL CD138135             [TGCTAATTTTTGCCAACAAACAAGATGTTTCTGGCTGTATGTCTGTTGCTGAAATCAGTCACAATCTAAACCTTACGTCTATTAGGGACCACCCGTGGCATGTACAGCCTTGTTGCGCACTCACAGGAGAAGGGCTTCCTCAAGGTTTGGATTGGATTGCAACTCAAATTGGGCGATAACAGTGAAGGTTTTTACTATTCTTATCTTCATTTGCAATATAAGCTTCTGTAATTAGTTAGCGTAGCCAAGGAAGTAATATTCAAGCTACGTTTATCACCGATGTGAGCTCTTTTGCAGTTGTCGGTGTTTTCATGGTAGTTAGTATTGGAAATATTGTTATTTTGATCCACCTACGTTTTTCTGTCAACTTTGATGATTAATTAACTATATCTATCCTATTTTCTGTANATCGTCATGTCTCAACCCCTTC]




>consensus_285#1
TGCTAATTTTTGCCAACAAACAAGATGTTTCTGGCTGTATGTCTGTTGCTGAAATCAGTC
ACAATCTAAACCTTACGTCTATTAGGGACCACCCGTGGCATGTACAGCCTTGTTGCGCAC
TCACAGGAGAAGGGCTTCCTCAAGGTTTGGATTGGATTGCAACTCAAATTGGGCGATAAC
AGTGAAGGTTTTTACTATTCTTATCTTCATTTGCAATATAAGCTTCTGTAATTAGTTAGC
GTAGCCAAGGAAGTAATATTCAAGCTACGTTTATCACCGATGTGAGCTCTTTTGCAGTTG
TCGGTGTTTTCATGGTAGTTAGTATTGGAAATATTGTTATTTTGATCCACCTACGTTTTT
CTGTCAACTTTGATGATTAATTAACTATATCTATCCTATTTTCTGTANATCGTCATGTCT
CAACCCCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_285#0      TATACCAGTTCGTTCTCAAAGAAGCTGTACAGACTTCTCCTACCATTGGAAGCAATGTTG 60
consensus_285#1      ------------------------------------------------------------
                                                                                 

consensus_285#0      AGGAAGTAAAGTGGAAGAACCTACATTTCGTAATGTGGGATATTGGTGGACAGACTTCTG 120
consensus_285#1      ------------------------------------------------------------
                                                                                 

consensus_285#0      TTAGGGCTTCTTGGACCACATACTTTGCAGGCTCAGACTTTGTCATTTTAGTGGTTGATA 180
consensus_285#1      ------------------------------------------------------------
                                                                                 

consensus_285#0      GTACAGATCGGGAACGTTTATACCTGACTAAACAGGAGCTGTGTAAGCTACTAGTTGCTG 240
consensus_285#1      --------------TGCTAATTTTTGCCAACAAACAAGATGTTT---CTGGCTGTATGTC 43
                                    * * **   ** * * * *  ** *** *   **    **   * 

consensus_285#0      AGGAGTTGAAACGTTCGAAAATGCTAATTTTTGCCAACAAACAAGATGTTTCTGGCTGGA 300
consensus_285#1      TGTTGCTGAAATCAGTCACAATCTAAACCTT--------------ACGTCTATTAG-GGA 88
                      *  * *****      * ***   **  **              * ** * *    ***

consensus_285#0      CCACCCGTGGCATGTACAGCCTTGTTGCGCACTCACAGGAGAAGGGCTTCCTCAAGGTTT 360
consensus_285#1      CCACCCGTGGCATGTACAGCCTTGTTGCGCACTCACAGGAGAAGGGCTTCCTCAAGGTTT 148
                     ************************************************************

consensus_285#0      GGATTGGATTGCTACTCANATTGGGCGATAACAGTGAAGGTTTTTACTATTCTTATCTTC 420
consensus_285#1      GGATTGGATTGCAACTCAAATTGGGCGATAACAGTGAAGGTTTTTACTATTCTTATCTTC 208
                     ************ ***** *****************************************

consensus_285#0      ATTTGCAATATAAGTTTCTGTAATTAGTTAGCGTAGCCAAGGAAGTAATATTCAAGCTAC 480
consensus_285#1      ATTTGCAATATAAGCTTCTGTAATTAGTTAGCGTAGCCAAGGAAGTAATATTCAAGCTAC 268
                     ************** *********************************************

consensus_285#0      GTATATCACCGATGTGAGCCC--------------------------------------- 501
consensus_285#1      GTTTATCACCGATGTGAGCTCTTTTGCAGTTGTCGGTGTTTTCATGGTAGTTAGTATTGG 328
                     ** **************** *                                       

consensus_285#0      ------------------------------------------------------------
consensus_285#1      AAATATTGTTATTTTGATCCACCTACGTTTTTCTGTCAACTTTGATGATTAATTAACTAT 388
                                                                                 

consensus_285#0      ------------------------------------------
consensus_285#1      ATCTATCCTATTTTCTGTANATCGTCATGTCTCAACCCCTTC 430