cluster # 2860

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Schistosoma mansoni
cluster # 2860 cluster # 2860 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2860#0 length = 223 sequences # 1

consensus_2860#1 length = 214 sequences # 1

consensusID : consensus_2860#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence

                              [ACTACGAGGAAGCTATACTGGCTGACTCAAATCGGTTGACGTAGACATGATCATACCTGTTATCTTAGAAAGAAGATGAGATCACCTAGAATAGAAACCAAAAAAATAGAAGGAAGACAATAAAACCAAGATTGATCATTTTTCTTTTGTTTGTTTGTTCTTTTTGCTTAGATAAAAATAAACATTGACCGGATCATTGTGATCATGATTACTGACCTTTTTT]

[+] EMBL CD095594             [ACTACGAGGAAGCTATACTGGCTGACTCAAATCGGTTGACGTAGACATGATCATACCTGTTATCTTAGAAAGAAGATGAGATCACCTAGAATAGAAACCAAAAAAATAGAAGGAAGACAATAAAACCAAGATTGATCATTTTTCTTTTGTTTGTTTGTTCTTTTTGCTTAGATAAAAATAAACATTGACCGGATCATTGTGATCATGATTACTGACCTTTTTT]




>consensus_2860#0
ACTACGAGGAAGCTATACTGGCTGACTCAAATCGGTTGACGTAGACATGATCATACCTGT
TATCTTAGAAAGAAGATGAGATCACCTAGAATAGAAACCAAAAAAATAGAAGGAAGACAA
TAAAACCAAGATTGATCATTTTTCTTTTGTTTGTTTGTTCTTTTTGCTTAGATAAAAATA
AACATTGACCGGATCATTGTGATCATGATTACTGACCTTTTTT

consensusID : consensus_2860#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 214
fasta sequence

                              [TTGTAGCTGACTGACTGATCCAATCAGCTAACATAGAAATGATCAAACACTTTATTTAGAAAGTAGATCAGAATACAATGAATAGAAACCAAAAAAATAGAAGGAAGACAATAAAACCAAGATTGATCATTTTTCTTTTGTTTGTTTGTTCTTTTTGCTTAGATAAAAATAAACATTGACCGGATCATTGTGATCATGATTACTGACCTTTTTT]

[+] EMBL CD095593             [TTGTAGCTGACTGACTGATCCAATCAGCTAACATAGAAATGATCAAACACTTTATTTAGAAAGTAGATCAGAATACAATGAATAGAAACCAAAAAAATAGAAGGAAGACAATAAAACCAAGATTGATCATTTTTCTTTTGTTTGTTTGTTCTTTTTGCTTAGATAAAAATAAACATTGACCGGATCATTGTGATCATGATTACTGACCTTTTTT]




>consensus_2860#1
TTGTAGCTGACTGACTGATCCAATCAGCTAACATAGAAATGATCAAACACTTTATTTAGA
AAGTAGATCAGAATACAATGAATAGAAACCAAAAAAATAGAAGGAAGACAATAAAACCAA
GATTGATCATTTTTCTTTTGTTTGTTTGTTCTTTTTGCTTAGATAAAAATAAACATTGAC
CGGATCATTGTGATCATGATTACTGACCTTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2860#0      ACTACGAGGAAGCTATACTGGCTGACTCAAATCGGTTGACGTAGACATGATCATACCTGT 60
consensus_2860#1      ------TTGTAGCTG-ACTGACTGA-TCCAATCAGCTAACATAGAAATGATCAAACACTT 52
                              * ****  **** **** ** **** * * ** **** ******* **   *

consensus_2860#0      TATCTTAGAAAGAAGATGAGATCACCTAGAATAGAAACCAAAAAAATAGAAGGAAGACAA 120
consensus_2860#1      TAT-TTAGAAAGTAGATCAGAATACAATGAATAGAAACCAAAAAAATAGAAGGAAGACAA 111
                      *** ******** **** ***  **   ********************************

consensus_2860#0      TAAAACCAAGATTGATCATTTTTCTTTTGTTTGTTTGTTCTTTTTGCTTAGATAAAAATA 180
consensus_2860#1      TAAAACCAAGATTGATCATTTTTCTTTTGTTTGTTTGTTCTTTTTGCTTAGATAAAAATA 171
                      ************************************************************

consensus_2860#0      AACATTGACCGGATCATTGTGATCATGATTACTGACCTTTTTT 223
consensus_2860#1      AACATTGACCGGATCATTGTGATCATGATTACTGACCTTTTTT 214
                      *******************************************