These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [TATAGGCTGCAAAACTAGGACTGTAATGCATGTAGGGAGGAGTATGTAGATAAATGGCATTTCAGTATGACGCCTTATATAGGGGTATCGTGATAAACCTTACTTTAATTACTAATCTCGAACTTGAAACCTTAATTCCAATTGTATTTCCCTCACACTAATTAAAAATCCATTTTAACTTTGGTAGGCAGACGATTTGCTTCAACATCACTTCATAGTCTCTCAAATACCGTCCATAATGTATGGTCTCAACGAGAAATATTGTTATACACCACATGCCATAATAGTTACTTACCTGAAGAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTTCGAATGCCAAAGTCTTTCCACTTGCTGTTGGTGCTGATCCAAGAACATCGGATAAACCGTGGAGTGCAGGAGGTATAGCTGCAGTTTGCATAAGTGTATGAATTTCCAAACCACAATCACTGAGTGC] [+] EMBL CD067677 [TATAGGCTGCAAAACTAGGACTGTAATGCATGTAGGGAGGAGTATGTAGATAAATGGCATTTCAGTATGACGCCTTATATAGGGGTATCGTGATAAACCTTACTTTAATTACTAATCTCGAACTTGAAACCTTAATTCCAATTGTATTTCCCTCACACTAATTAAAAATCCATTTTAACTTTGGTAGGCAGACGATTTGCTTCAACATCACTTCATAGTCTCTCAAATACCGTCCATAATGTATGGTCTCAACGAGAAATATTGTTATACACCACATGCCATAATAGTTACTTACCTGAAGAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTTCGAATGCCAAAGTCTTTCCACTTGCTGTTGGTGCTGATCCAAGAACATCGGATAAACCGTGGAGTGCAGGAGGTATAGCTGCAGTTTGCATAAGTGTATGAATTTCCAAACCACAATCACTGAGTGC] consensusID : consensus_2862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [TAATTCCCTGGTAGGAACTAGAACAAGCCCATAAACACGATTTCCTATTCAAATTCGGTTTCAGACAAACAGGAGGTTCGATAATTGGGAGTGTTTCAGAATCTTCTGTAACAGGATCACCAAGGGAATGGACTGCGCGAATTTCCCCAGTATTTACATCTAACTCTTCTATGACATCTAAACCTGAATAAATGTCGGTTTCCTTCTTTCTTTTCTTCTTTTTCCCACAAGGCTTGACGCAAGATGCCACTTCATATTTTTGTTGGTCAATCACGCTATTAATTTTGGATTCTTCCTCACAAGTCTGGCTCTGAAGAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTCCGAATGCCAAAGTCTTCCCACTTCCTGTTGGTGCTGATCCAAGAACATCGGAGAAACCGTGGAGTGCAGGAGGTAT] [-] EMBL BF936735 [TAATTCCCTGGTAGGAACTAGAACAAGCCCATAAACACGATTTCCTATTCAAATTCGGTTTCAGACAAACAGGAGGTTCGATAATTGGGAGTGTTTCAGAATCTTCTGTAACAGGATCACCAAGGGAATGGACTGCGCGAATTTCCCCAGTATTTACATCTAACTCTTCTATGACATCTAAACCTGAATAAATGTCGGTTTCCTTCTTTCTTTTCTTCTTTTTCCCACAAGGCTTGACGCAAGATGCCACTTCATATTTTTGTTGGTCAATCACGCTATTAATTTTGGATTCTTCCTCACAAGTCTGGCTCTGAAGAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTCCGAATGCCAAAGTCTTCCCACTTCCTGTTGGTGCTGATCCAAGAACATCGGAGAAACCGTGGAGTGCAGGAGGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2862#0 TATAGGCTGCAAAACTAGGACTGTAAT--GCATGTAGGGAGGAGTATGTAGATAAATGGC 58 consensus_2862#1 ---TAATTCCCTGGTAGGAACTAGAACAAGCCCATAAACACGATTTCCTATTCAAATTCG 57 * * * *** ** ** ** * ** * ** **** consensus_2862#0 ATTTCAG-----TATGACGCCTTATATAGGGGTATCGTGATAAACCTTACTTTAATTACT 113 consensus_2862#1 GTTTCAGACAAACAGGAGGTTCGATAATTGGGAGTGTTTCAGAATCTTCTGTAACAGGAT 117 ****** * ** * *** *** * * ** *** * * * consensus_2862#0 AATCTCGAACTTGAA--ACCTTAATTCCAATTGTATTTCCCTCACACTAATTAAAAATCC 171 consensus_2862#1 CACCAAGGGAATGGACTGCGCGAATTTCCCCAGTATTTACATCTAACTCTTCTATGA--C 175 * * * ** * * **** * ****** * ** *** * * * * consensus_2862#0 ATTTTAACTTTGGTAGGCAGACGATTTGCTTCAA-CATCACTTCATAGTCTCTCAAATAC 230 consensus_2862#1 ATCTAAACCTGAATAAAT-GTCGGTTTCCTTCTTTCTTTTCTTCTTTTTCCCACAAGGCT 234 ** * *** * ** * ** *** **** * * **** * ** * *** consensus_2862#0 CGTC-CATAATGT------ATGGTCTCAACGAGAAATATTGTTATACACC----ACATGC 279 consensus_2862#1 TGACGCAAGATGCCACTTCATATTTTTGTTGGTCAATCACGCTATTAATTTTGGATTCTT 294 * * ** *** ** * * * *** * *** * * consensus_2862#0 CATAATAGTTACTTACCTGAAGAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTT 339 consensus_2862#1 CCTCACAAGTCTGGCTCTGAAGAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTC 354 * * * * * ******************************************* consensus_2862#0 CGAATGCCAAAGTCTTTCCACTTGCTGTTGGTGCTGATCCAAGAACATCGGATAAACCGT 399 consensus_2862#1 CGAATGCCAAAGTCTTCCCACTTCCTGTTGGTGCTGATCCAAGAACATCGGAGAAACCGT 414 **************** ****** **************************** ******* consensus_2862#0 GGAGTGCAGGAGGTATAGCTGCAGTTTGCATAAGTGTATGAATTTCCAAACCACAATCAC 459 consensus_2862#1 GGAGTGCAGGAGGTAT-------------------------------------------- 430 **************** consensus_2862#0 TGAGTGC 466 consensus_2862#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||