cluster # 2862

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Schistosoma mansoni
cluster # 2862 cluster # 2862 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2862#0 length = 466 sequences # 1

consensus_2862#1 length = 430 sequences # 1

consensusID : consensus_2862#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [TATAGGCTGCAAAACTAGGACTGTAATGCATGTAGGGAGGAGTATGTAGATAAATGGCATTTCAGTATGACGCCTTATATAGGGGTATCGTGATAAACCTTACTTTAATTACTAATCTCGAACTTGAAACCTTAATTCCAATTGTATTTCCCTCACACTAATTAAAAATCCATTTTAACTTTGGTAGGCAGACGATTTGCTTCAACATCACTTCATAGTCTCTCAAATACCGTCCATAATGTATGGTCTCAACGAGAAATATTGTTATACACCACATGCCATAATAGTTACTTACCTGAAGAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTTCGAATGCCAAAGTCTTTCCACTTGCTGTTGGTGCTGATCCAAGAACATCGGATAAACCGTGGAGTGCAGGAGGTATAGCTGCAGTTTGCATAAGTGTATGAATTTCCAAACCACAATCACTGAGTGC]

[+] EMBL CD067677             [TATAGGCTGCAAAACTAGGACTGTAATGCATGTAGGGAGGAGTATGTAGATAAATGGCATTTCAGTATGACGCCTTATATAGGGGTATCGTGATAAACCTTACTTTAATTACTAATCTCGAACTTGAAACCTTAATTCCAATTGTATTTCCCTCACACTAATTAAAAATCCATTTTAACTTTGGTAGGCAGACGATTTGCTTCAACATCACTTCATAGTCTCTCAAATACCGTCCATAATGTATGGTCTCAACGAGAAATATTGTTATACACCACATGCCATAATAGTTACTTACCTGAAGAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTTCGAATGCCAAAGTCTTTCCACTTGCTGTTGGTGCTGATCCAAGAACATCGGATAAACCGTGGAGTGCAGGAGGTATAGCTGCAGTTTGCATAAGTGTATGAATTTCCAAACCACAATCACTGAGTGC]




>consensus_2862#0
TATAGGCTGCAAAACTAGGACTGTAATGCATGTAGGGAGGAGTATGTAGATAAATGGCAT
TTCAGTATGACGCCTTATATAGGGGTATCGTGATAAACCTTACTTTAATTACTAATCTCG
AACTTGAAACCTTAATTCCAATTGTATTTCCCTCACACTAATTAAAAATCCATTTTAACT
TTGGTAGGCAGACGATTTGCTTCAACATCACTTCATAGTCTCTCAAATACCGTCCATAAT
GTATGGTCTCAACGAGAAATATTGTTATACACCACATGCCATAATAGTTACTTACCTGAA
GAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTTCGAATGCCAAAGTCTTTCCAC
TTGCTGTTGGTGCTGATCCAAGAACATCGGATAAACCGTGGAGTGCAGGAGGTATAGCTG
CAGTTTGCATAAGTGTATGAATTTCCAAACCACAATCACTGAGTGC

consensusID : consensus_2862#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [TAATTCCCTGGTAGGAACTAGAACAAGCCCATAAACACGATTTCCTATTCAAATTCGGTTTCAGACAAACAGGAGGTTCGATAATTGGGAGTGTTTCAGAATCTTCTGTAACAGGATCACCAAGGGAATGGACTGCGCGAATTTCCCCAGTATTTACATCTAACTCTTCTATGACATCTAAACCTGAATAAATGTCGGTTTCCTTCTTTCTTTTCTTCTTTTTCCCACAAGGCTTGACGCAAGATGCCACTTCATATTTTTGTTGGTCAATCACGCTATTAATTTTGGATTCTTCCTCACAAGTCTGGCTCTGAAGAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTCCGAATGCCAAAGTCTTCCCACTTCCTGTTGGTGCTGATCCAAGAACATCGGAGAAACCGTGGAGTGCAGGAGGTAT]

[-] EMBL BF936735             [TAATTCCCTGGTAGGAACTAGAACAAGCCCATAAACACGATTTCCTATTCAAATTCGGTTTCAGACAAACAGGAGGTTCGATAATTGGGAGTGTTTCAGAATCTTCTGTAACAGGATCACCAAGGGAATGGACTGCGCGAATTTCCCCAGTATTTACATCTAACTCTTCTATGACATCTAAACCTGAATAAATGTCGGTTTCCTTCTTTCTTTTCTTCTTTTTCCCACAAGGCTTGACGCAAGATGCCACTTCATATTTTTGTTGGTCAATCACGCTATTAATTTTGGATTCTTCCTCACAAGTCTGGCTCTGAAGAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTCCGAATGCCAAAGTCTTCCCACTTCCTGTTGGTGCTGATCCAAGAACATCGGAGAAACCGTGGAGTGCAGGAGGTAT]




>consensus_2862#1
TAATTCCCTGGTAGGAACTAGAACAAGCCCATAAACACGATTTCCTATTCAAATTCGGTT
TCAGACAAACAGGAGGTTCGATAATTGGGAGTGTTTCAGAATCTTCTGTAACAGGATCAC
CAAGGGAATGGACTGCGCGAATTTCCCCAGTATTTACATCTAACTCTTCTATGACATCTA
AACCTGAATAAATGTCGGTTTCCTTCTTTCTTTTCTTCTTTTTCCCACAAGGCTTGACGC
AAGATGCCACTTCATATTTTTGTTGGTCAATCACGCTATTAATTTTGGATTCTTCCTCAC
AAGTCTGGCTCTGAAGAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTCCGAATG
CCAAAGTCTTCCCACTTCCTGTTGGTGCTGATCCAAGAACATCGGAGAAACCGTGGAGTG
CAGGAGGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2862#0      TATAGGCTGCAAAACTAGGACTGTAAT--GCATGTAGGGAGGAGTATGTAGATAAATGGC 58
consensus_2862#1      ---TAATTCCCTGGTAGGAACTAGAACAAGCCCATAAACACGATTTCCTATTCAAATTCG 57
                             * *       * ***  **   **   **   * ** *   **   ****   

consensus_2862#0      ATTTCAG-----TATGACGCCTTATATAGGGGTATCGTGATAAACCTTACTTTAATTACT 113
consensus_2862#1      GTTTCAGACAAACAGGAGGTTCGATAATTGGGAGTGTTTCAGAATCTTCTGTAACAGGAT 117
                       ******      * ** *    ***   ***  *  *    ** ***   * *     *

consensus_2862#0      AATCTCGAACTTGAA--ACCTTAATTCCAATTGTATTTCCCTCACACTAATTAAAAATCC 171
consensus_2862#1      CACCAAGGGAATGGACTGCGCGAATTTCCCCAGTATTTACATCTAACTCTTCTATGA--C 175
                       * *  *    ** *   *   **** *    ****** * **  ***  *  *  *  *

consensus_2862#0      ATTTTAACTTTGGTAGGCAGACGATTTGCTTCAA-CATCACTTCATAGTCTCTCAAATAC 230
consensus_2862#1      ATCTAAACCTGAATAAAT-GTCGGTTTCCTTCTTTCTTTTCTTCTTTTTCCCACAAGGCT 234
                      ** * *** *   **    * ** *** ****   * *  **** *  ** * ***    

consensus_2862#0      CGTC-CATAATGT------ATGGTCTCAACGAGAAATATTGTTATACACC----ACATGC 279
consensus_2862#1      TGACGCAAGATGCCACTTCATATTTTTGTTGGTCAATCACGCTATTAATTTTGGATTCTT 294
                       * * **  ***       **  * *    *   ***   * ***  *      *     

consensus_2862#0      CATAATAGTTACTTACCTGAAGAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTT 339
consensus_2862#1      CCTCACAAGTCTGGCTCTGAAGAGTCTTGAGGGAGAATACTTTTGATACTAGAGGAATTC 354
                      * * * *  *      ******************************************* 

consensus_2862#0      CGAATGCCAAAGTCTTTCCACTTGCTGTTGGTGCTGATCCAAGAACATCGGATAAACCGT 399
consensus_2862#1      CGAATGCCAAAGTCTTCCCACTTCCTGTTGGTGCTGATCCAAGAACATCGGAGAAACCGT 414
                      **************** ****** **************************** *******

consensus_2862#0      GGAGTGCAGGAGGTATAGCTGCAGTTTGCATAAGTGTATGAATTTCCAAACCACAATCAC 459
consensus_2862#1      GGAGTGCAGGAGGTAT-------------------------------------------- 430
                      ****************                                            

consensus_2862#0      TGAGTGC 466
consensus_2862#1      -------