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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 2899 cluster # 2899       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2899#0 length = 204 sequences # 1  
consensus_2899#1 length = 154 sequences # 1  

consensusID : consensus_2899#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence
                              [AGTGACATATCACTGCATTGATCACTGAGGTGATGTAACTCTGATTCAGGCTCTGCCTATAGGGGGGCTTGTGACATATCTCTGCACTGATCACCCACGTGATGTAACTCTTGTCTAGTATCTGCTTACAGGGGATATTGTGAGATATCTCTGCACTGATCACCCACATGATGTAACTCTTTTCTAGGCTCGGCCTACAGGGGC]

[+] EMBL CD097012             [AGTGACATATCACTGCATTGATCACTGAGGTGATGTAACTCTGATTCAGGCTCTGCCTATAGGGGGGCTTGTGACATATCTCTGCACTGATCACCCACGTGATGTAACTCTTGTCTAGTATCTGCTTACAGGGGATATTGTGAGATATCTCTGCACTGATCACCCACATGATGTAACTCTTTTCTAGGCTCGGCCTACAGGGGC]


>consensus_2899#0 AGTGACATATCACTGCATTGATCACTGAGGTGATGTAACTCTGATTCAGGCTCTGCCTAT AGGGGGGCTTGTGACATATCTCTGCACTGATCACCCACGTGATGTAACTCTTGTCTAGTA TCTGCTTACAGGGGATATTGTGAGATATCTCTGCACTGATCACCCACATGATGTAACTCT TTTCTAGGCTCGGCCTACAGGGGC



consensusID : consensus_2899#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 154
fasta sequence
                              [ATCAGTGCAGAGATATGTCACAAGCCCCCTGTAGGCAGAGCCTAAACAAGAGTTATATCACCTGGGTGATCAGTGCAGAGATATGTCACAATGCCGTGTAACCAGAGCCTAGACTAAAGTTACAGCACCTGGGAGATCAGTGCACAGATATGTC]

[+] EMBL CD164663             [ATCAGTGCAGAGATATGTCACAAGCCCCCTGTAGGCAGAGCCTAAACAAGAGTTATATCACCTGGGTGATCAGTGCAGAGATATGTCACAATGCCGTGTAACCAGAGCCTAGACTAAAGTTACAGCACCTGGGAGATCAGTGCACAGATATGTC]


>consensus_2899#1 ATCAGTGCAGAGATATGTCACAAGCCCCCTGTAGGCAGAGCCTAAACAAGAGTTATATCA CCTGGGTGATCAGTGCAGAGATATGTCACAATGCCGTGTAACCAGAGCCTAGACTAAAGT TACAGCACCTGGGAGATCAGTGCACAGATATGTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2899#0      AGTGACATATCACTGCATTGATCACTGAGGTGATGTAACTCTGATTCAGGCTCTGCCTAT 60
consensus_2899#1      --------ATCAGTGCAGAGAT-------ATGTCACAAGCCCCCTGTAGGCAGAGCCTAA 45
                              **** ****  ***        **    **  *   *  ****   ***** 

consensus_2899#0      AGGGGGGCT-TGTGACAT-----ATCTCTGCACTGATCACCCAC---GTGATGTAACTCT 111
consensus_2899#1      ACAAGAGTTATATCACCTGGGTGATCAGTGCAGAGATATGTCACAATGCCGTGTAACCAG 105
                      *   * * * * * ** *     ***  ****  ***    ***   *   ******   

consensus_2899#0      TGTCTAGTATCTGCTTACAGGGGATATTGTGAGATATCTCTGCACTGATCACCCACATGA 171
consensus_2899#1      AGCCTAGACTAAAGTTACAGCA-----CCTGGGAGATCAGTGCACAGATATGTC------ 154
                       * ****  *    ******         ** ** ***  ***** ***    *      

consensus_2899#0      TGTAACTCTTTTCTAGGCTCGGCCTACAGGGGC 204
consensus_2899#1      ---------------------------------
                                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)