These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2899#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence [AGTGACATATCACTGCATTGATCACTGAGGTGATGTAACTCTGATTCAGGCTCTGCCTATAGGGGGGCTTGTGACATATCTCTGCACTGATCACCCACGTGATGTAACTCTTGTCTAGTATCTGCTTACAGGGGATATTGTGAGATATCTCTGCACTGATCACCCACATGATGTAACTCTTTTCTAGGCTCGGCCTACAGGGGC] [+] EMBL CD097012 [AGTGACATATCACTGCATTGATCACTGAGGTGATGTAACTCTGATTCAGGCTCTGCCTATAGGGGGGCTTGTGACATATCTCTGCACTGATCACCCACGTGATGTAACTCTTGTCTAGTATCTGCTTACAGGGGATATTGTGAGATATCTCTGCACTGATCACCCACATGATGTAACTCTTTTCTAGGCTCGGCCTACAGGGGC] consensusID : consensus_2899#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 154 fasta sequence [ATCAGTGCAGAGATATGTCACAAGCCCCCTGTAGGCAGAGCCTAAACAAGAGTTATATCACCTGGGTGATCAGTGCAGAGATATGTCACAATGCCGTGTAACCAGAGCCTAGACTAAAGTTACAGCACCTGGGAGATCAGTGCACAGATATGTC] [+] EMBL CD164663 [ATCAGTGCAGAGATATGTCACAAGCCCCCTGTAGGCAGAGCCTAAACAAGAGTTATATCACCTGGGTGATCAGTGCAGAGATATGTCACAATGCCGTGTAACCAGAGCCTAGACTAAAGTTACAGCACCTGGGAGATCAGTGCACAGATATGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2899#0 AGTGACATATCACTGCATTGATCACTGAGGTGATGTAACTCTGATTCAGGCTCTGCCTAT 60 consensus_2899#1 --------ATCAGTGCAGAGAT-------ATGTCACAAGCCCCCTGTAGGCAGAGCCTAA 45 **** **** *** ** ** * * **** ***** consensus_2899#0 AGGGGGGCT-TGTGACAT-----ATCTCTGCACTGATCACCCAC---GTGATGTAACTCT 111 consensus_2899#1 ACAAGAGTTATATCACCTGGGTGATCAGTGCAGAGATATGTCACAATGCCGTGTAACCAG 105 * * * * * * ** * *** **** *** *** * ****** consensus_2899#0 TGTCTAGTATCTGCTTACAGGGGATATTGTGAGATATCTCTGCACTGATCACCCACATGA 171 consensus_2899#1 AGCCTAGACTAAAGTTACAGCA-----CCTGGGAGATCAGTGCACAGATATGTC------ 154 * **** * ****** ** ** *** ***** *** * consensus_2899#0 TGTAACTCTTTTCTAGGCTCGGCCTACAGGGGC 204 consensus_2899#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||