These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 789 fasta sequence [CTCGAGGCCAANAATTTGGCACGAGGGGTTGTGATTGGGTCATACTTGGACATTCTGAGCGTAGAAACATTTTTGGTGAATCTGATGAACTTATTGCTGAAAAAGTTCAACATGCACTTGCTGAAGGTCTAAGCGTTATTGCATGTATTGGTGAAACATTATCAGAGCGTGAATCTAATAAAACAGAGGAAGTATGCGTTAGACAGTTAAAAGCTATTGCAAATAAGATTAAATCAGCTGATGAATGGAAACGAGTAGTTGTAGCATATGAACCAGTTTGGGCTATTGGAACAGGTAAAGTTGCTACACCACAACAAGCTCAAGAAGTTCATAATTTCCTTCGTAAATGGTTTAAAACGAATGCACCAAATGGAGTTGATGAAAAAATACGTATTATCTATGGTGGATCTGTAACTGCTGCCAATTGTAAAGAATTAGCTCAACAACATGATGTCGATGGATTTTTGGTTGGTGGAGCTTCATTAAAACCGGAATTCACTGAGATATGTAAAGCCAGACAACGTTGAACGTTTTGTTGGTCTTCTTCTTCTTACGCTTCTAAATTTTGTCTCTTCTCATGTCAGTTACTTGCTTTTTTTGTCTTGTTTTTTTGTTTTGACAACCAAAGCATATTATAATTAGTAGTATCTTAATGTCTAATGTAAAAAAATATCACCACTAGTTCGAACTATNTAATTACTATCAGTCAAAAAAATATATTTGTCAATTTAGTTCATTGTTTCATTNATCGNCCCTTCTATTTAAATTTCTTATGCCCTAAATATACCC] [+] EMBL CD081309 [CTCGAGGCCAANAATTTGGCACGAGGGGTTGTGATTGGGTCATACTTGGACATTCTGAGCGTAGAAACATTTTTGGTGAATCTGATGAACTTATTGCTGAAAAAGTTCAACATGCACTTGCTGAAGGTCTAAGCGTTATTGCATGTATTGGTGAAACATTATCAGAGCGTGAATCTAATAAAACAGAGGAAGTATGCGTTAGACAGTTAAAAGCTATTGCAAATAAGATTAAATCAGCTGATGAATGGAAACGAGTAGTTGTAGCATATGAACCAGTTTGGGCTATTGGAACAGGTAAAGTTGCTACACCACAACAAGCTCAAGAAGTTCATAATTTCCTTCGTAAATGGTTTAAAACGAATGCACCAAATGGAGTTGATGAAAAAATACGTATTATCTATGGTGGATCTGTAACTGCTGCCAATTGTAAAGAATTAGCTCAACAACATGATGTCGATGGATTTTTGGTTGGTGGAGCTTCATTAAAACCGGAATTCACTGAGATATGTAAAGCCAGACAACGTTGAACGTTTTGTTGGTCTTCTTCTTCTTACGCTTCTAAATTTTGTCTCTTCTCATGTCAGTTACTTGCTTTTTTTGTCTTGTTTTTTTGTTTTGACAACCAAAGCATATTATAATTAGTAGTATCTTAATGTCTAATGTAAAAAAATATCACCACTAGTTCGAACTATNTAATTACTATCAGTCAAAAAAATATATTTGTCAATTTAGTTCATTGTTTCATTNATCGNCCCTTCTATTTAAATTTCTTATGCCCTAAATATACCC] consensusID : consensus_291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 231 fasta sequence [AGTACAAGAGTTAATGGAATTTTTGCACACCAGTTAACTGTCCATTCAAAAAAGAACAAGTTAAGAAGTTTAGTAAGCAGCCTAACTAAAGACTAGGAGTAGGACAACTAAATCATGACTTGAACTCTTGATGTTTATGCTTATAATTTGTAAGTTAGTAGTGTTCTTTATAATAATAGTAATTTAATTTATAAAAAAAAAAAAAAAAAAAAATAGTGGCTAAGAACATGA] [+] EMBL AA952811 [AGTACAAGAGTTAATGGAATTTTTGCACACCAGTTAACTGTCCATTCAAAAAAGAACAAGTTAAGAAGTTTAGTAAGCAGCCTAACTAAAGACTAGGAGTAGGACAACTAAATCATGACTTGAACTCTTGATGTTTATGCTTATAATTTGTAAGTTAGTAGTGTTCTTTATAATAATAGTAATTTAATTTATAAAAAAAAAAAAAAAAAAAAATAGTGGCTAAGAACATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_291#0 CTCGAGGCCAANAATTTGGCACGAGGGGTTGTGATTGGGTCATACTTGGACATTCTGAGC 60 consensus_291#1 ------------------------------------------------------------ consensus_291#0 GTAGAAACATTTTTGGTGAATCTGATGAACTTATTGCTGAAAAAGTTCAACATGCACTTG 120 consensus_291#1 ------------------------------------------------------------ consensus_291#0 CTGAAGGTCTAAGCGTTATTGCATGTATTGGTGAAACATTATCAGAGCGTGAATCTAATA 180 consensus_291#1 -----------------------------------------------------AGTACAA 7 ** * consensus_291#0 AAACAGAGGAAGTATGCGTTAGACAGTTAAAAGCTATTGCAAATAAGATTAAATCAGCTG 240 consensus_291#1 GAGTTAATGGAATTTTTGCACACCAGTTAACTGTCCATTCAAAAAAGAACAAGTTAAGAA 67 * * * * * * * ******* * * **** **** ** * * consensus_291#0 ATGAATGGAAACGAGTAGTTGTAGCATATGAACCAGTTTGGGCTATTGGAACAGGTAAAG 300 consensus_291#1 GTTTAGTAAGCAGCCTAACTAAAGACTAGGAGTAGGACAACTAAATCATGACTTGAACTC 127 * * * * ** * ** ** ** * ** ** * * consensus_291#0 TTGCTACACCACAACAAGCTCAAGAAGTTCATAATTTCCTTCGTAAATGGTTTAAAACGA 360 consensus_291#1 TTGATGTTTATGCTTATAATTTGTAAGTTAGTAGTGTTCTTTATAA-TAATAGTAATTTA 186 *** * * * ***** ** * * *** *** * * ** * consensus_291#0 ATGCACCAAATGGAGTTGATGAAAAAATACGTATTATCTATGGTGGATCTGTAACTGCTG 420 consensus_291#1 ATTTATAAAAAAAAAAAAAAAAAAAAATAGTGGCTAAGAACA-TGA-------------- 231 ** * *** * * ******** ** * ** consensus_291#0 CCAATTGTAAAGAATTAGCTCAACAACATGATGTCGATGGATTTTTGGTTGGTGGAGCTT 480 consensus_291#1 ------------------------------------------------------------ consensus_291#0 CATTAAAACCGGAATTCACTGAGATATGTAAAGCCAGACAACGTTGAACGTTTTGTTGGT 540 consensus_291#1 ------------------------------------------------------------ consensus_291#0 CTTCTTCTTCTTACGCTTCTAAATTTTGTCTCTTCTCATGTCAGTTACTTGCTTTTTTTG 600 consensus_291#1 ------------------------------------------------------------ consensus_291#0 TCTTGTTTTTTTGTTTTGACAACCAAAGCATATTATAATTAGTAGTATCTTAATGTCTAA 660 consensus_291#1 ------------------------------------------------------------ consensus_291#0 TGTAAAAAAATATCACCACTAGTTCGAACTATNTAATTACTATCAGTCAAAAAAATATAT 720 consensus_291#1 ------------------------------------------------------------ consensus_291#0 TTGTCAATTTAGTTCATTGTTTCATTNATCGNCCCTTCTATTTAAATTTCTTATGCCCTA 780 consensus_291#1 ------------------------------------------------------------ consensus_291#0 AATATACCC 789 consensus_291#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||