Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 291 cluster # 291       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_291#0 length = 789 sequences # 1  
consensus_291#1 length = 231 sequences # 1  

consensusID : consensus_291#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 789
fasta sequence
                              [CTCGAGGCCAANAATTTGGCACGAGGGGTTGTGATTGGGTCATACTTGGACATTCTGAGCGTAGAAACATTTTTGGTGAATCTGATGAACTTATTGCTGAAAAAGTTCAACATGCACTTGCTGAAGGTCTAAGCGTTATTGCATGTATTGGTGAAACATTATCAGAGCGTGAATCTAATAAAACAGAGGAAGTATGCGTTAGACAGTTAAAAGCTATTGCAAATAAGATTAAATCAGCTGATGAATGGAAACGAGTAGTTGTAGCATATGAACCAGTTTGGGCTATTGGAACAGGTAAAGTTGCTACACCACAACAAGCTCAAGAAGTTCATAATTTCCTTCGTAAATGGTTTAAAACGAATGCACCAAATGGAGTTGATGAAAAAATACGTATTATCTATGGTGGATCTGTAACTGCTGCCAATTGTAAAGAATTAGCTCAACAACATGATGTCGATGGATTTTTGGTTGGTGGAGCTTCATTAAAACCGGAATTCACTGAGATATGTAAAGCCAGACAACGTTGAACGTTTTGTTGGTCTTCTTCTTCTTACGCTTCTAAATTTTGTCTCTTCTCATGTCAGTTACTTGCTTTTTTTGTCTTGTTTTTTTGTTTTGACAACCAAAGCATATTATAATTAGTAGTATCTTAATGTCTAATGTAAAAAAATATCACCACTAGTTCGAACTATNTAATTACTATCAGTCAAAAAAATATATTTGTCAATTTAGTTCATTGTTTCATTNATCGNCCCTTCTATTTAAATTTCTTATGCCCTAAATATACCC]

[+] EMBL CD081309             [CTCGAGGCCAANAATTTGGCACGAGGGGTTGTGATTGGGTCATACTTGGACATTCTGAGCGTAGAAACATTTTTGGTGAATCTGATGAACTTATTGCTGAAAAAGTTCAACATGCACTTGCTGAAGGTCTAAGCGTTATTGCATGTATTGGTGAAACATTATCAGAGCGTGAATCTAATAAAACAGAGGAAGTATGCGTTAGACAGTTAAAAGCTATTGCAAATAAGATTAAATCAGCTGATGAATGGAAACGAGTAGTTGTAGCATATGAACCAGTTTGGGCTATTGGAACAGGTAAAGTTGCTACACCACAACAAGCTCAAGAAGTTCATAATTTCCTTCGTAAATGGTTTAAAACGAATGCACCAAATGGAGTTGATGAAAAAATACGTATTATCTATGGTGGATCTGTAACTGCTGCCAATTGTAAAGAATTAGCTCAACAACATGATGTCGATGGATTTTTGGTTGGTGGAGCTTCATTAAAACCGGAATTCACTGAGATATGTAAAGCCAGACAACGTTGAACGTTTTGTTGGTCTTCTTCTTCTTACGCTTCTAAATTTTGTCTCTTCTCATGTCAGTTACTTGCTTTTTTTGTCTTGTTTTTTTGTTTTGACAACCAAAGCATATTATAATTAGTAGTATCTTAATGTCTAATGTAAAAAAATATCACCACTAGTTCGAACTATNTAATTACTATCAGTCAAAAAAATATATTTGTCAATTTAGTTCATTGTTTCATTNATCGNCCCTTCTATTTAAATTTCTTATGCCCTAAATATACCC]


>consensus_291#0 CTCGAGGCCAANAATTTGGCACGAGGGGTTGTGATTGGGTCATACTTGGACATTCTGAGC GTAGAAACATTTTTGGTGAATCTGATGAACTTATTGCTGAAAAAGTTCAACATGCACTTG CTGAAGGTCTAAGCGTTATTGCATGTATTGGTGAAACATTATCAGAGCGTGAATCTAATA AAACAGAGGAAGTATGCGTTAGACAGTTAAAAGCTATTGCAAATAAGATTAAATCAGCTG ATGAATGGAAACGAGTAGTTGTAGCATATGAACCAGTTTGGGCTATTGGAACAGGTAAAG TTGCTACACCACAACAAGCTCAAGAAGTTCATAATTTCCTTCGTAAATGGTTTAAAACGA ATGCACCAAATGGAGTTGATGAAAAAATACGTATTATCTATGGTGGATCTGTAACTGCTG CCAATTGTAAAGAATTAGCTCAACAACATGATGTCGATGGATTTTTGGTTGGTGGAGCTT CATTAAAACCGGAATTCACTGAGATATGTAAAGCCAGACAACGTTGAACGTTTTGTTGGT CTTCTTCTTCTTACGCTTCTAAATTTTGTCTCTTCTCATGTCAGTTACTTGCTTTTTTTG TCTTGTTTTTTTGTTTTGACAACCAAAGCATATTATAATTAGTAGTATCTTAATGTCTAA TGTAAAAAAATATCACCACTAGTTCGAACTATNTAATTACTATCAGTCAAAAAAATATAT TTGTCAATTTAGTTCATTGTTTCATTNATCGNCCCTTCTATTTAAATTTCTTATGCCCTA AATATACCC



consensusID : consensus_291#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 231
fasta sequence
                              [AGTACAAGAGTTAATGGAATTTTTGCACACCAGTTAACTGTCCATTCAAAAAAGAACAAGTTAAGAAGTTTAGTAAGCAGCCTAACTAAAGACTAGGAGTAGGACAACTAAATCATGACTTGAACTCTTGATGTTTATGCTTATAATTTGTAAGTTAGTAGTGTTCTTTATAATAATAGTAATTTAATTTATAAAAAAAAAAAAAAAAAAAAATAGTGGCTAAGAACATGA]

[+] EMBL AA952811             [AGTACAAGAGTTAATGGAATTTTTGCACACCAGTTAACTGTCCATTCAAAAAAGAACAAGTTAAGAAGTTTAGTAAGCAGCCTAACTAAAGACTAGGAGTAGGACAACTAAATCATGACTTGAACTCTTGATGTTTATGCTTATAATTTGTAAGTTAGTAGTGTTCTTTATAATAATAGTAATTTAATTTATAAAAAAAAAAAAAAAAAAAAATAGTGGCTAAGAACATGA]


>consensus_291#1 AGTACAAGAGTTAATGGAATTTTTGCACACCAGTTAACTGTCCATTCAAAAAAGAACAAG TTAAGAAGTTTAGTAAGCAGCCTAACTAAAGACTAGGAGTAGGACAACTAAATCATGACT TGAACTCTTGATGTTTATGCTTATAATTTGTAAGTTAGTAGTGTTCTTTATAATAATAGT AATTTAATTTATAAAAAAAAAAAAAAAAAAAAATAGTGGCTAAGAACATGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_291#0      CTCGAGGCCAANAATTTGGCACGAGGGGTTGTGATTGGGTCATACTTGGACATTCTGAGC 60
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      GTAGAAACATTTTTGGTGAATCTGATGAACTTATTGCTGAAAAAGTTCAACATGCACTTG 120
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      CTGAAGGTCTAAGCGTTATTGCATGTATTGGTGAAACATTATCAGAGCGTGAATCTAATA 180
consensus_291#1      -----------------------------------------------------AGTACAA 7
                                                                            **  *

consensus_291#0      AAACAGAGGAAGTATGCGTTAGACAGTTAAAAGCTATTGCAAATAAGATTAAATCAGCTG 240
consensus_291#1      GAGTTAATGGAATTTTTGCACACCAGTTAACTGTCCATTCAAAAAAGAACAAGTTAAGAA 67
                      *    * * * * *  *     *******  *    * **** ****  ** * *    

consensus_291#0      ATGAATGGAAACGAGTAGTTGTAGCATATGAACCAGTTTGGGCTATTGGAACAGGTAAAG 300
consensus_291#1      GTTTAGTAAGCAGCCTAACTAAAGACTAGGAGTAGGACAACTAAATCATGACTTGAACTC 127
                      *  *   *   *  **  *  **  ** **    *        **    **  * *   

consensus_291#0      TTGCTACACCACAACAAGCTCAAGAAGTTCATAATTTCCTTCGTAAATGGTTTAAAACGA 360
consensus_291#1      TTGATGTTTATGCTTATAATTTGTAAGTTAGTAGTGTTCTTTATAA-TAATAGTAATTTA 186
                     *** *          *   *    *****  ** * * ***  *** *  *   **   *

consensus_291#0      ATGCACCAAATGGAGTTGATGAAAAAATACGTATTATCTATGGTGGATCTGTAACTGCTG 420
consensus_291#1      ATTTATAAAAAAAAAAAAAAAAAAAAATAGTGGCTAAGAACA-TGA-------------- 231
                     **  *  ***   *    *  ********     **   *   **               

consensus_291#0      CCAATTGTAAAGAATTAGCTCAACAACATGATGTCGATGGATTTTTGGTTGGTGGAGCTT 480
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      CATTAAAACCGGAATTCACTGAGATATGTAAAGCCAGACAACGTTGAACGTTTTGTTGGT 540
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      CTTCTTCTTCTTACGCTTCTAAATTTTGTCTCTTCTCATGTCAGTTACTTGCTTTTTTTG 600
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      TCTTGTTTTTTTGTTTTGACAACCAAAGCATATTATAATTAGTAGTATCTTAATGTCTAA 660
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      TGTAAAAAAATATCACCACTAGTTCGAACTATNTAATTACTATCAGTCAAAAAAATATAT 720
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      TTGTCAATTTAGTTCATTGTTTCATTNATCGNCCCTTCTATTTAAATTTCTTATGCCCTA 780
consensus_291#1      ------------------------------------------------------------
                                                                                 

consensus_291#0      AATATACCC 789
consensus_291#1      ---------
                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)