cluster # 2933

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Schistosoma mansoni
cluster # 2933 cluster # 2933 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2933#0 length = 473 sequences # 1

consensus_2933#1 length = 321 sequences # 1

consensusID : consensus_2933#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [CCGTACCAGAGCCTTTGAGGGCAGTGAAATGCTATAATGAGTTGTCCGATTTGTGAAAATCGTGAACTTGTAGAAGATGAAAACACTGGGCAGTTGATTTGTTCAGAATGTGGAACTGCAACAGGTGTTTATAGAGGAGTTACCCAATCCCAGGATTTCTCTGAAACCCGTGGATTACGAGTGATCCAAAAGACCGAACACATAGTTAGTCAATCCAACCAAGCAGCTACAGATAACATAGCGGATACTTCGAGATTTGTAAAAGTTGAACCGGATAGCACACATGACCAAAATATGAATTCTGTTTGTCGGGAAGACTTGTTGAACACATTAGATGATGATCTTTTCAGCGGGAGTGAGGTGAGCTTCATTAATCCCACGCAGAAAGAAAAGTGCTTTGAACGCCATCGTCCTTGGCGGTTATCCGAACCTTTCACTTTCATAATGAGACGTCAAGCAAACTGTTTGGCTCA]

[+] EMBL CD097982             [CCGTACCAGAGCCTTTGAGGGCAGTGAAATGCTATAATGAGTTGTCCGATTTGTGAAAATCGTGAACTTGTAGAAGATGAAAACACTGGGCAGTTGATTTGTTCAGAATGTGGAACTGCAACAGGTGTTTATAGAGGAGTTACCCAATCCCAGGATTTCTCTGAAACCCGTGGATTACGAGTGATCCAAAAGACCGAACACATAGTTAGTCAATCCAACCAAGCAGCTACAGATAACATAGCGGATACTTCGAGATTTGTAAAAGTTGAACCGGATAGCACACATGACCAAAATATGAATTCTGTTTGTCGGGAAGACTTGTTGAACACATTAGATGATGATCTTTTCAGCGGGAGTGAGGTGAGCTTCATTAATCCCACGCAGAAAGAAAAGTGCTTTGAACGCCATCGTCCTTGGCGGTTATCCGAACCTTTCACTTTCATAATGAGACGTCAAGCAAACTGTTTGGCTCA]




>consensus_2933#0
CCGTACCAGAGCCTTTGAGGGCAGTGAAATGCTATAATGAGTTGTCCGATTTGTGAAAAT
CGTGAACTTGTAGAAGATGAAAACACTGGGCAGTTGATTTGTTCAGAATGTGGAACTGCA
ACAGGTGTTTATAGAGGAGTTACCCAATCCCAGGATTTCTCTGAAACCCGTGGATTACGA
GTGATCCAAAAGACCGAACACATAGTTAGTCAATCCAACCAAGCAGCTACAGATAACATA
GCGGATACTTCGAGATTTGTAAAAGTTGAACCGGATAGCACACATGACCAAAATATGAAT
TCTGTTTGTCGGGAAGACTTGTTGAACACATTAGATGATGATCTTTTCAGCGGGAGTGAG
GTGAGCTTCATTAATCCCACGCAGAAAGAAAAGTGCTTTGAACGCCATCGTCCTTGGCGG
TTATCCGAACCTTTCACTTTCATAATGAGACGTCAAGCAAACTGTTTGGCTCA

consensusID : consensus_2933#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence

                              [TCTTCTGGAATCATCTTGCTTTCAAGTACTTCACTAATCGATTTAGCCAATAAAAGAGCTTCATTAATCCCACGCAGAAAGAAAAGTGCTTTGAACGCCATCGTCCTTGGCGGTTATCCGAACCTTTCACTTTCATAATGAGACGTCAAGCAAACTGTTTGGCTAAAGAATTAAATCTTTCCGTGGAACAAAAAGTATCATTTTGTGATACTGTTTGGAGCATATGGCTCCACTATTTGTCTATAACTGGCGAACTTGGCTCTGATGCTTGGGCAAATGCAGCTCTTTTATTGGCTAAATCGATTAGTGAAGGACTGGAAA]

[+] EMBL CD112956             [TCTTCTGGAATCATCTTGCTTTCAAGTACTTCACTAATCGATTTAGCCAATAAAAGAGCTTCATTAATCCCACGCAGAAAGAAAAGTGCTTTGAACGCCATCGTCCTTGGCGGTTATCCGAACCTTTCACTTTCATAATGAGACGTCAAGCAAACTGTTTGGCTAAAGAATTAAATCTTTCCGTGGAACAAAAAGTATCATTTTGTGATACTGTTTGGAGCATATGGCTCCACTATTTGTCTATAACTGGCGAACTTGGCTCTGATGCTTGGGCAAATGCAGCTCTTTTATTGGCTAAATCGATTAGTGAAGGACTGGAAA]




>consensus_2933#1
TCTTCTGGAATCATCTTGCTTTCAAGTACTTCACTAATCGATTTAGCCAATAAAAGAGCT
TCATTAATCCCACGCAGAAAGAAAAGTGCTTTGAACGCCATCGTCCTTGGCGGTTATCCG
AACCTTTCACTTTCATAATGAGACGTCAAGCAAACTGTTTGGCTAAAGAATTAAATCTTT
CCGTGGAACAAAAAGTATCATTTTGTGATACTGTTTGGAGCATATGGCTCCACTATTTGT
CTATAACTGGCGAACTTGGCTCTGATGCTTGGGCAAATGCAGCTCTTTTATTGGCTAAAT
CGATTAGTGAAGGACTGGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2933#0      CCGTACCAGAGCCTTTGAGGGCAGTGAAATGCTATAATGAGTTGTCCGATTTGTGAAAAT 60
consensus_2933#1      ------------------------------------------------------------
                                                                                  

consensus_2933#0      CGTGAACTTGTAGAAGATGAAAACACTGGGCAGTTGATTTGTTCAGAATGTGGAACTGCA 120
consensus_2933#1      -------------------------------------TCTTCTGGAATCATCTTGCTTTC 23
                                                           * *  *   *   *    **   

consensus_2933#0      ACAGGTGTTTATAGAGGAGTTACCCAATCCCAGGATTTCTCTGAAACC-CGTGGATTACG 179
consensus_2933#1      AAGTACTTCACTAATCGATTTAGCCAATAAAAGAGCTTCATTAATCCCACGCAGAAAGAA 83
                      *      *   **   ** *** *****   **   ***  * *  ** **  **     

consensus_2933#0      AGTGATCCAAAAGACCGAACACATAGTTAGTCAATCCAACCAAGCAGCTACA-GATAACA 238
consensus_2933#1      AAGTGCTTTGAACGCCATCGTCCTTGGCGGTTATCCGAACCTTTCACTTTCATAATGAGA 143
                      *         **  **     * * *   ** *  * ****   **  * **  ** * *

consensus_2933#0      TAGCGGATACTTCGAGATTTGTAAAAGTTGAACCGGATAGCACACATGACCAAAATATGA 298
consensus_2933#1      CGTCAAGCAAACTGT--TTGGCTAAAG---AATTAAATCTTTCCGTGGAACAAAAAGTA- 197
                         *    *    *   ** *  ****   **    **    *    ** *****  *  

consensus_2933#0      ATTCTGTTTGTCGGGAAGACTTGTTGAACACATTAGATGATGATCTTTTCAGCGGGAGTG 358
consensus_2933#1      --TCATTTTGT---GATACTGTTTGGAGCATATGGCTCCACTATTTGTCTATAACTGGCG 252
                        **  *****   **     * * ** ** **      *  ** * *  *      * *

consensus_2933#0      AGGTGAGCTTCATTAATCCCACGCAGAAAGAAAAGTGCTTTGAACGCCATCGTCCTTGGC 418
consensus_2933#1      AACTTGGCTCTGATGCT----TGGGCAAATGCAGCTCTTTTATTGGCTAAATCGATTAGT 308
                      *  *  ***    *  *     *   ***   *  *  ***    ** *      ** * 

consensus_2933#0      GGTTATCCGAACCTTTCACTTTCATAATGAGACGTCAAGCAAACTGTTTGGCTCA 473
consensus_2933#1      GAAGGACTGGAAA------------------------------------------ 321
                      *     * * *