These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [CCGTACCAGAGCCTTTGAGGGCAGTGAAATGCTATAATGAGTTGTCCGATTTGTGAAAATCGTGAACTTGTAGAAGATGAAAACACTGGGCAGTTGATTTGTTCAGAATGTGGAACTGCAACAGGTGTTTATAGAGGAGTTACCCAATCCCAGGATTTCTCTGAAACCCGTGGATTACGAGTGATCCAAAAGACCGAACACATAGTTAGTCAATCCAACCAAGCAGCTACAGATAACATAGCGGATACTTCGAGATTTGTAAAAGTTGAACCGGATAGCACACATGACCAAAATATGAATTCTGTTTGTCGGGAAGACTTGTTGAACACATTAGATGATGATCTTTTCAGCGGGAGTGAGGTGAGCTTCATTAATCCCACGCAGAAAGAAAAGTGCTTTGAACGCCATCGTCCTTGGCGGTTATCCGAACCTTTCACTTTCATAATGAGACGTCAAGCAAACTGTTTGGCTCA] [+] EMBL CD097982 [CCGTACCAGAGCCTTTGAGGGCAGTGAAATGCTATAATGAGTTGTCCGATTTGTGAAAATCGTGAACTTGTAGAAGATGAAAACACTGGGCAGTTGATTTGTTCAGAATGTGGAACTGCAACAGGTGTTTATAGAGGAGTTACCCAATCCCAGGATTTCTCTGAAACCCGTGGATTACGAGTGATCCAAAAGACCGAACACATAGTTAGTCAATCCAACCAAGCAGCTACAGATAACATAGCGGATACTTCGAGATTTGTAAAAGTTGAACCGGATAGCACACATGACCAAAATATGAATTCTGTTTGTCGGGAAGACTTGTTGAACACATTAGATGATGATCTTTTCAGCGGGAGTGAGGTGAGCTTCATTAATCCCACGCAGAAAGAAAAGTGCTTTGAACGCCATCGTCCTTGGCGGTTATCCGAACCTTTCACTTTCATAATGAGACGTCAAGCAAACTGTTTGGCTCA] consensusID : consensus_2933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [TCTTCTGGAATCATCTTGCTTTCAAGTACTTCACTAATCGATTTAGCCAATAAAAGAGCTTCATTAATCCCACGCAGAAAGAAAAGTGCTTTGAACGCCATCGTCCTTGGCGGTTATCCGAACCTTTCACTTTCATAATGAGACGTCAAGCAAACTGTTTGGCTAAAGAATTAAATCTTTCCGTGGAACAAAAAGTATCATTTTGTGATACTGTTTGGAGCATATGGCTCCACTATTTGTCTATAACTGGCGAACTTGGCTCTGATGCTTGGGCAAATGCAGCTCTTTTATTGGCTAAATCGATTAGTGAAGGACTGGAAA] [+] EMBL CD112956 [TCTTCTGGAATCATCTTGCTTTCAAGTACTTCACTAATCGATTTAGCCAATAAAAGAGCTTCATTAATCCCACGCAGAAAGAAAAGTGCTTTGAACGCCATCGTCCTTGGCGGTTATCCGAACCTTTCACTTTCATAATGAGACGTCAAGCAAACTGTTTGGCTAAAGAATTAAATCTTTCCGTGGAACAAAAAGTATCATTTTGTGATACTGTTTGGAGCATATGGCTCCACTATTTGTCTATAACTGGCGAACTTGGCTCTGATGCTTGGGCAAATGCAGCTCTTTTATTGGCTAAATCGATTAGTGAAGGACTGGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2933#0 CCGTACCAGAGCCTTTGAGGGCAGTGAAATGCTATAATGAGTTGTCCGATTTGTGAAAAT 60 consensus_2933#1 ------------------------------------------------------------ consensus_2933#0 CGTGAACTTGTAGAAGATGAAAACACTGGGCAGTTGATTTGTTCAGAATGTGGAACTGCA 120 consensus_2933#1 -------------------------------------TCTTCTGGAATCATCTTGCTTTC 23 * * * * * ** consensus_2933#0 ACAGGTGTTTATAGAGGAGTTACCCAATCCCAGGATTTCTCTGAAACC-CGTGGATTACG 179 consensus_2933#1 AAGTACTTCACTAATCGATTTAGCCAATAAAAGAGCTTCATTAATCCCACGCAGAAAGAA 83 * * ** ** *** ***** ** *** * * ** ** ** consensus_2933#0 AGTGATCCAAAAGACCGAACACATAGTTAGTCAATCCAACCAAGCAGCTACA-GATAACA 238 consensus_2933#1 AAGTGCTTTGAACGCCATCGTCCTTGGCGGTTATCCGAACCTTTCACTTTCATAATGAGA 143 * ** ** * * * ** * * **** ** * ** ** * * consensus_2933#0 TAGCGGATACTTCGAGATTTGTAAAAGTTGAACCGGATAGCACACATGACCAAAATATGA 298 consensus_2933#1 CGTCAAGCAAACTGT--TTGGCTAAAG---AATTAAATCTTTCCGTGGAACAAAAAGTA- 197 * * * ** * **** ** ** * ** ***** * consensus_2933#0 ATTCTGTTTGTCGGGAAGACTTGTTGAACACATTAGATGATGATCTTTTCAGCGGGAGTG 358 consensus_2933#1 --TCATTTTGT---GATACTGTTTGGAGCATATGGCTCCACTATTTGTCTATAACTGGCG 252 ** ***** ** * * ** ** ** * ** * * * * * consensus_2933#0 AGGTGAGCTTCATTAATCCCACGCAGAAAGAAAAGTGCTTTGAACGCCATCGTCCTTGGC 418 consensus_2933#1 AACTTGGCTCTGATGCT----TGGGCAAATGCAGCTCTTTTATTGGCTAAATCGATTAGT 308 * * *** * * * *** * * *** ** * ** * consensus_2933#0 GGTTATCCGAACCTTTCACTTTCATAATGAGACGTCAAGCAAACTGTTTGGCTCA 473 consensus_2933#1 GAAGGACTGGAAA------------------------------------------ 321 * * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||