cluster # 2934

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Schistosoma mansoni
cluster # 2934 cluster # 2934 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2934#0 length = 342 sequences # 1

consensus_2934#1 length = 199 sequences # 1

consensusID : consensus_2934#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [TTCATTGGATTTATCAATCACCTCTTTTTCTTTCTTTAACTGAACTTCTGGTGCGTCCTCAACGTTGTCTATTCTTTTGCGTTTGTCCCTGAGTGTGAGACACTCTGTAACGCATTCTTTGGGTGTTATTATATTTCTCATTTGTTTTTCAACTGCTTCTTTCCCTAAATTGACCATCGATATTTCCGCATCCAATTGTGAGTGAGCTAATTCCAAAATATCTTTCAAGTCTTTTATGGCATTGATTCTGTCTGCAAGTCTTGTTGTGTTGTTAAATTCATCCCATTTAGACTTAAGAGCAGCTGCTAGGCGTAAAGAACGTGTTTCTTGTCTGATTTGCTC]

[+] EMBL CD098032             [TTCATTGGATTTATCAATCACCTCTTTTTCTTTCTTTAACTGAACTTCTGGTGCGTCCTCAACGTTGTCTATTCTTTTGCGTTTGTCCCTGAGTGTGAGACACTCTGTAACGCATTCTTTGGGTGTTATTATATTTCTCATTTGTTTTTCAACTGCTTCTTTCCCTAAATTGACCATCGATATTTCCGCATCCAATTGTGAGTGAGCTAATTCCAAAATATCTTTCAAGTCTTTTATGGCATTGATTCTGTCTGCAAGTCTTGTTGTGTTGTTAAATTCATCCCATTTAGACTTAAGAGCAGCTGCTAGGCGTAAAGAACGTGTTTCTTGTCTGATTTGCTC]




>consensus_2934#0
TTCATTGGATTTATCAATCACCTCTTTTTCTTTCTTTAACTGAACTTCTGGTGCGTCCTC
AACGTTGTCTATTCTTTTGCGTTTGTCCCTGAGTGTGAGACACTCTGTAACGCATTCTTT
GGGTGTTATTATATTTCTCATTTGTTTTTCAACTGCTTCTTTCCCTAAATTGACCATCGA
TATTTCCGCATCCAATTGTGAGTGAGCTAATTCCAAAATATCTTTCAAGTCTTTTATGGC
ATTGATTCTGTCTGCAAGTCTTGTTGTGTTGTTAAATTCATCCCATTTAGACTTAAGAGC
AGCTGCTAGGCGTAAAGAACGTGTTTCTTGTCTGATTTGCTC

consensusID : consensus_2934#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [TGGGATGGGCTTGAAAGAAACTCCTGGACAATTAGGTCTCAGTTTGTACTGTTCAATGTCGATGTCCATGGCAGCATGCTTATCCTGTAGATCAAGTAATACTTGCTGCCTAGCCTCTTTAAGAAGATCATTCGTTCAAATGCCTCATCCACTTTCTGCTGAAGATTTTTATTGGATTTATCAATCACCTCTTTTTCTT]

[+] EMBL CD125635             [TGGGATGGGCTTGAAAGAAACTCCTGGACAATTAGGTCTCAGTTTGTACTGTTCAATGTCGATGTCCATGGCAGCATGCTTATCCTGTAGATCAAGTAATACTTGCTGCCTAGCCTCTTTAAGAAGATCATTCGTTCAAATGCCTCATCCACTTTCTGCTGAAGATTTTTATTGGATTTATCAATCACCTCTTTTTCTT]




>consensus_2934#1
TGGGATGGGCTTGAAAGAAACTCCTGGACAATTAGGTCTCAGTTTGTACTGTTCAATGTC
GATGTCCATGGCAGCATGCTTATCCTGTAGATCAAGTAATACTTGCTGCCTAGCCTCTTT
AAGAAGATCATTCGTTCAAATGCCTCATCCACTTTCTGCTGAAGATTTTTATTGGATTTA
TCAATCACCTCTTTTTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2934#0      TTCATTGGATTTATCAATCACCTCTTTTTCTTTCTTTAACTGAACTTCTGGTGCGTCCTC 60
consensus_2934#1      ------------------------TGGGATGGGCTTGAAAGAAACTCCTGG-ACAATTAG 35
                                              *        *** **   **** ****  *      

consensus_2934#0      AACGTTGTCTATTCTTTTGCGTTTGTCCCTGAGTGTGAGACACTCTGTAACGCATTCTTT 120
consensus_2934#1      GTCTCAGTTTGTACTGTTCAAT--GTCGATGTCCATGGCAGCATGCTTATCCTGTAGATC 93
                        *   ** * * ** **   *  ***  **    **  *   *   ** *   *   * 

consensus_2934#0      GGGTGTTATTATATTTCTCATTTGTTTTTCAACTGCTTCTTTCCCTAAATTGACCATCGA 180
consensus_2934#1      AAGTAATACT-TGCTGCCTAGCC-TCTTTAAGAAGATCATTCGTTCAAATGCCTCATCCA 151
                        **  ** * *  * *  *    * *** *   * *  **     ****    **** *

consensus_2934#0      TATTTCCGCATCCAATTGTGAGTGAGCTAATTCCAAAATATCTTTCAAGTCTTTTATGGC 240
consensus_2934#1      C-TTTCTGCTGAAGATTTTTATTGGATTTAT-CAATCACCTCTTTT---TCTT------- 199
                        **** **     *** * * **   * ** * *  *  *****    ****       

consensus_2934#0      ATTGATTCTGTCTGCAAGTCTTGTTGTGTTGTTAAATTCATCCCATTTAGACTTAAGAGC 300
consensus_2934#1      ------------------------------------------------------------
                                                                                  

consensus_2934#0      AGCTGCTAGGCGTAAAGAACGTGTTTCTTGTCTGATTTGCTC 342
consensus_2934#1      ------------------------------------------