cluster # 294

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Schistosoma mansoni
cluster # 294 cluster # 294 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_294#0 length = 677 sequences # 1

consensus_294#1 length = 351 sequences # 1

consensusID : consensus_294#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 677
fasta sequence

                              [TAAATGAACAAGCTTCAACTAAAGCACGTAGTAGTCAGGAAGTTTCTGAATTACAACGACAATTAGAAGAAGCAGAGTCACAATTAAGTCAACTGAATAAAATTAAACAACAACTAAGTGCACAACTTGAAGAAGCACGTCATAGTTTGGAAGATGAAAGTCGAATGAAAGCTAAACTAAACGGTGAAGTACGTAATTTAACTAGTGACTTAGATTCATTACGTGAAACTTTAGAAGAAGAACAATCAGCTAAAGGTGATTTACAACGTCAATTACAAAAATTACAAGGTGAATTACAACAATTACGTTCACGTGGTGGCGGTGGTGGAGATGTTCGTTCTGAAGAAGTTGAAGAATTAAAACGTAAAATGAATGCTAAAATACAAGAATTAGAATCAGTAGCCGAATCAGCTAAATCAAAATGTGGACAATTAGAAAAAACTAAAGCACGTTTACAAGGTGAATTANAAGATTTAATGGTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTAAACAAAATAATTTCAATCGTACATTAGCTGAATGGCAAAAGAAATATGCTGATTCTCAGGCTGAATTAGAAAATGCTCAACGTGATGCACGTGGTCAATCAACCGAAATTTTCCGATTAAAAGCTCAATTAGAAGAAGTTCATGAACAAATG]

[+] EMBL CD066156             [TAAATGAACAAGCTTCAACTAAAGCACGTAGTAGTCAGGAAGTTTCTGAATTACAACGACAATTAGAAGAAGCAGAGTCACAATTAAGTCAACTGAATAAAATTAAACAACAACTAAGTGCACAACTTGAAGAAGCACGTCATAGTTTGGAAGATGAAAGTCGAATGAAAGCTAAACTAAACGGTGAAGTACGTAATTTAACTAGTGACTTAGATTCATTACGTGAAACTTTAGAAGAAGAACAATCAGCTAAAGGTGATTTACAACGTCAATTACAAAAATTACAAGGTGAATTACAACAATTACGTTCACGTGGTGGCGGTGGTGGAGATGTTCGTTCTGAAGAAGTTGAAGAATTAAAACGTAAAATGAATGCTAAAATACAAGAATTAGAATCAGTAGCCGAATCAGCTAAATCAAAATGTGGACAATTAGAAAAAACTAAAGCACGTTTACAAGGTGAATTANAAGATTTAATGGTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTAAACAAAATAATTTCAATCGTACATTAGCTGAATGGCAAAAGAAATATGCTGATTCTCAGGCTGAATTAGAAAATGCTCAACGTGATGCACGTGGTCAATCAACCGAAATTTTCCGATTAAAAGCTCAATTAGAAGAAGTTCATGAACAAATG]




>consensus_294#0
TAAATGAACAAGCTTCAACTAAAGCACGTAGTAGTCAGGAAGTTTCTGAATTACAACGAC
AATTAGAAGAAGCAGAGTCACAATTAAGTCAACTGAATAAAATTAAACAACAACTAAGTG
CACAACTTGAAGAAGCACGTCATAGTTTGGAAGATGAAAGTCGAATGAAAGCTAAACTAA
ACGGTGAAGTACGTAATTTAACTAGTGACTTAGATTCATTACGTGAAACTTTAGAAGAAG
AACAATCAGCTAAAGGTGATTTACAACGTCAATTACAAAAATTACAAGGTGAATTACAAC
AATTACGTTCACGTGGTGGCGGTGGTGGAGATGTTCGTTCTGAAGAAGTTGAAGAATTAA
AACGTAAAATGAATGCTAAAATACAAGAATTAGAATCAGTAGCCGAATCAGCTAAATCAA
AATGTGGACAATTAGAAAAAACTAAAGCACGTTTACAAGGTGAATTANAAGATTTAATGG
TTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTAAACAAAATAATTTCA
ATCGTACATTAGCTGAATGGCAAAAGAAATATGCTGATTCTCAGGCTGAATTAGAAAATG
CTCAACGTGATGCACGTGGTCAATCAACCGAAATTTTCCGATTAAAAGCTCAATTAGAAG
AAGTTCATGAACAAATG

consensusID : consensus_294#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [GCTTCAACTAAAGCACGTAGTAGTCAGGAAGTTTCTGAATTACAACGACAATTAGAAGAAGCAGAGTCACAATTAAGTCAACTGAATAAAATTAAACAACAACTAAGTGCACAACTTGAAGAAGCACGTCATAGTTTGGAAGATGATAGTATTATGAAAGCTAAATTGAATTCCGAGAAAACAGTGAAGGCTCTAGAATCTCAATTACAAGAAGTTTCCGTGAAATTAGATGAAGCTACAAGGAACTTAAATGAACAAGCTTCAACTAAAGCACGTAGTAGTCAGGAAGTTTCTGAATTACAACGACAATTAGAAGAAGCAGAGTCACAATTAAGTCAACTGAATAAAATT]

[+] EMBL CD137914             [GCTTCAACTAAAGCACGTAGTAGTCAGGAAGTTTCTGAATTACAACGACAATTAGAAGAAGCAGAGTCACAATTAAGTCAACTGAATAAAATTAAACAACAACTAAGTGCACAACTTGAAGAAGCACGTCATAGTTTGGAAGATGATAGTATTATGAAAGCTAAATTGAATTCCGAGAAAACAGTGAAGGCTCTAGAATCTCAATTACAAGAAGTTTCCGTGAAATTAGATGAAGCTACAAGGAACTTAAATGAACAAGCTTCAACTAAAGCACGTAGTAGTCAGGAAGTTTCTGAATTACAACGACAATTAGAAGAAGCAGAGTCACAATTAAGTCAACTGAATAAAATT]




>consensus_294#1
GCTTCAACTAAAGCACGTAGTAGTCAGGAAGTTTCTGAATTACAACGACAATTAGAAGAA
GCAGAGTCACAATTAAGTCAACTGAATAAAATTAAACAACAACTAAGTGCACAACTTGAA
GAAGCACGTCATAGTTTGGAAGATGATAGTATTATGAAAGCTAAATTGAATTCCGAGAAA
ACAGTGAAGGCTCTAGAATCTCAATTACAAGAAGTTTCCGTGAAATTAGATGAAGCTACA
AGGAACTTAAATGAACAAGCTTCAACTAAAGCACGTAGTAGTCAGGAAGTTTCTGAATTA
CAACGACAATTAGAAGAAGCAGAGTCACAATTAAGTCAACTGAATAAAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_294#0      TAAATGAACAAGCTTCAACTAAAGCACGTAGTAGTCAGGAAGTTTCTGAATTACAACGAC 60
consensus_294#1      -----------GCTTCAACTAAAGCACGTAGTAGTCAGGAAGTTTCTGAATTACAACGAC 49
                                *************************************************

consensus_294#0      AATTAGAAGAAGCAGAGTCACAATTAAGTCAACTGAATAAAATTAAACAACAACTAAGTG 120
consensus_294#1      AATTAGAAGAAGCAGAGTCACAATTAAGTCAACTGAATAAAATTAAACAACAACTAAGTG 109
                     ************************************************************

consensus_294#0      CACAACTTGAAGAAGCACGTCATAGTTTGGAAGATGAAAGTCGAATGAAAGCTAAACTAA 180
consensus_294#1      CACAACTTGAAGAAGCACGTCATAGTTTGGAAGATGATAGTATTATGAAAGCTAAATTGA 169
                     ************************************* ***   ************ * *

consensus_294#0      ACGGTGAAGTACGTAATTTAACTAGTGACTTAGATTCATTACGTGAAACTTTAGAAGAAG 240
consensus_294#1      ATTCCGAGA----------AAACAGTGA-----------------AGGCTCTAGAATC-- 200
                     *    **            **  *****                 *  ** *****    

consensus_294#0      AACAATCAGCTAAAGGTGATTTACAACGTCAATTACA-AAAATTACAAGGTGAATTACAA 299
consensus_294#1      -----TCAATTACAAGAAGTTTCCGTGA--AATTAGATGAAGCTACAAGG-AACTTAAAT 252
                          ***  ** * *   *** *      ***** *  **  *******  * *** * 

consensus_294#0      CAATTACGTTCACGTGGTGGCGGTGGTGGAGATGTTCGTTCTGAAGAAGTTGAAGAATTA 359
consensus_294#1      GAACAAGCTTCAACTAAAGCACGTAGTAG------------TCAGGAAGTTTCTGAATTA 300
                      **  *  ****  *   *   ** ** *            * * ******   ******

consensus_294#0      AAACGTAAAATGAATGCTAAAATACAAGAATTAGAATCAGTAGCCGAATCAGCTAAATCA 419
consensus_294#1      CAACG-ACAAT-----------TAGAAGAAGCAGAGTCA-CAATTAAGTCAACTGAATAA 347
                      **** * ***           ** *****  *** ***  *    * *** ** *** *

consensus_294#0      AAATGTGGACAATTAGAAAAAACTAAAGCACGTTTACAAGGTGAATTANAAGATTTAATG 479
consensus_294#1      AATT-------------------------------------------------------- 351
                     ** *                                                        

consensus_294#0      GTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTAAACAAAATAATTTC 539
consensus_294#1      ------------------------------------------------------------
                                                                                 

consensus_294#0      AATCGTACATTAGCTGAATGGCAAAAGAAATATGCTGATTCTCAGGCTGAATTAGAAAAT 599
consensus_294#1      ------------------------------------------------------------
                                                                                 

consensus_294#0      GCTCAACGTGATGCACGTGGTCAATCAACCGAAATTTTCCGATTAAAAGCTCAATTAGAA 659
consensus_294#1      ------------------------------------------------------------
                                                                                 

consensus_294#0      GAAGTTCATGAACAAATG 677
consensus_294#1      ------------------